Paul D. Thomas
Molecular Biology · 1996–2023
A researcher in the Science corpus: 36 papers; trusts 71 researchers and is trusted by 32 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 461 citations into it; #574 of 17,773 by trust here, #602 by citations
- Genetics — 99 citations into it; #2,089 of 6,854 by trust here, #3,614 by citations
- Computational Biology & Bioinformatics — 91 citations into it
- Spectroscopy — 60 citations into it
- Materials Chemistry — 40 citations into it
- Ecology — 16 citations into it
- Cancer Research — 12 citations into it
- Algorithms & Complexity — 6 citations into it
Whom Paul D. Thomas trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Huaiyu Mi
- Anushya Muruganujan
- Pauline Crystal Ng
- Manfred J. Sippl
- Pascale Gaudet
- Joël Janin
- Steven Henikoff
- Akira Funahashi
- Anish Kejariwal
- Haiming Tang
Who trusts Paul D. Thomas overall
- Huaiyu Mi
- Zsuzsanna Dosztányi
- Anushya Muruganujan
- Dustin Ebert
- Shengyou Huang
- Gene Ontology Consortium
- Xiaosong Huang
- Bálint Mészáros
- Haiming Tang
- Pascale Gaudet
Papers from Paul D. Thomas's perspective
Ordered by how strongly the researchers Paul D. Thomas trusts endorse each paper. Same corpus, a different order for every researcher.
- Basic local alignment search tool.
- dbSNP: the NCBI database of genetic variation
- The SWISS-PROT protein sequence data bank and its supplement TrEMBL
- PANTHER: a library of protein families and subfamilies indexed by function. (Genome Research)
- Predicting deleterious amino acid substitutions.
- RefSeq and LocusLink: NCBI gene-centered resources (Nucleic Acids Res.)
- Hidden Markov models in computational biology. Applications to protein modeling.
- Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
- The TIGRFAMs database of protein families (Nucleic Acids Res.)
- PIRSF: family classification system at the Protein Information Resource
Their papers
- InterPro: the integrative protein signature database (2008) — 2,089 citations
- The InterPro protein families database: the classification resource after 15 years (2014) — 1,300 citations
- PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways (2006) — 379 citations
- The PANTHER database of protein families, subfamilies, functions and pathways (2004) — 855 citations
- InterPro in 2017—beyond protein family and domain annotations (2016) — 1,390 citations
- InterPro in 2019: improving coverage, classification and access to protein sequence annotations (2018) — 1,309 citations
- Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium (2011) — 783 citations
- New developments in the InterPro database (2007) — 542 citations
- PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium (2009) — 606 citations
- PANTHER version 10: expanded protein families and functions, and analysis tools (2015) — 815 citations
- PANTHER: a library of protein families and subfamilies indexed by function. (2003) — 2,961 citations
- PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools (2018) — 2,640 citations
- The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database (2017) — 1,458 citations
- Large-scale gene function analysis with PANTHER Classification System (2013) — 2,397 citations
- Standardised Benchmarking in the Quest for Orthologs (2016) — 213 citations
- PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements (2016) — 1,995 citations
- PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees (2012) — 1,769 citations
- The Gene Ontology knowledgebase in 2023 (2023) — 2,378 citations
- PANTHER Pathway: an ontology-based pathway database coupled with data analysis tools (2009) — 712 citations
- Applications for protein sequence–function evolution data: mRNA/protein expression analysis and coding SNP scoring tools (2006) — 528 citations