ESTIMATING THE NUMBER OF SHARED SPECIES IN TWO COMMUNITIES

By A. Chao, Wen-Han Hwang, C. Kuo. 2000

321 citations recorded by the source corpus.

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Citations in the corpus

Impact of the Little Fire Ant, Wasmannia auropunctata, on Native Forest Ants in Gabon 1 (2006, unknown): “To estimate maximum species richness based on both common and rare species, the accumulation data were extrapolated using Incidence-based Coverage Estimator (ICE; Chao et al. 2000).”
A Similarity Measure Based on Species Proportions (2005, background): “(crabs) living in coral communities at two locations in Panama. Chao (3, 4 ) estimates the”
IMPROVING INFERENCES IN POPULATION STUDIES OF RARE SPECIES THAT ARE DETECTED IMPERFECTLY (2005, background): “This problem was considered by Cam et al. (2000; also see Nichols 1998b, Chao et al. 2000).”
PREDICTING THE NUMBER OF NEW SPECIES IN FURTHER TAXONOMIC SAMPLING (2003, methodology): “We propose the use of an estimator derived in Chao and Lee (1992) and Chao et al. (2000).”
EstimateS turns 20: statistical estimation of species richness and shared species from samples, with non‐parametric extrapolation (2014, background): “Unconditional variance (and the confidence limits derived from it) for sample-based rarefaction was introduced by Colwell et al. (2004), while unconditional variance for individual-based rarefaction was missing from the toolbox of biodiversity statistics until 2012 (Colwell et al.”
Diversity and assemblage structure of phytophagous Hemiptera along a latitudinal gradient: predicting the potential impacts of climate change (2005, methodology): “Estimates of the total number of species (based on the number of singleton and doubleton species) within the phytophagous Hemiptera assemblage, within latitudes, were made using the Chao-1 index calculated using EstimateS 5.0 (Colwell & Coddington, 1994; Chao et al ., 2000 ).”
Models and estimators linking individual-based and sample-based rarefaction, extrapolation and comparison of assemblages (2012, unknown): “For assemblages with many rare species, the abundance-based coverage estimator (ACE) (Chao and Lee 1992; Chao et al. 2000; Chazdon et al. 1998) is often a more appropriate estimator of asymptotic richness (Chao and Shen 2004), S est ACE = S obs + f 0 ACE .”
Predicting the Conditional Probability of Discovering a New Class (2004, background): “The special case where t = 0 has been discussed by Good (1953), Esty (1982, 1983, 1986), Lo (1992), and Efron (2003). The validity of Û(0) = n1s−1 has been widely accepted (Esty 1983; Chao and Lee 1992; Chao, Hwang, Chen, and Kuo 2000), and a thorough investigation was done by Mao and Lindsay (2002)”
Species diversity and structure of phytophagous beetle assemblages along a latitudinal gradient: predicting the potential impacts of climate change (2004, unknown): “Estimates of the total number of species within the phytophagous beetle community within latitudes were made using the Chao-1 index in EstimateS 5.0 (Colwell & Coddington, 1994; Chao et al., 2000).”
Effectiveness of Bowl Trapping and Netting for Inventory of a Bee Community (2011, methodology): “The number of species estimated to be shared between netting and bowl collections (Chao et al. 2000, Colwell 2009) was 113 out of the 223 species (51”
Molecular tracing of confiscated pangolin scales for conservation and illegal trade monitoring in Southeast Asia (2015, methodology): “Sample coverage methods (Huang andWeir, 2001)were adapted from techniques that have been used in ecological investigations to estimate the total number of species based on a single sample or a set of samples (Chao et al., 2000; Colwell et al., 2012).”
Diversity patterns of wild bees and wasps in managed boreal forests: Effects of spatial structure, local habitat and surrounding landscape (2015, background): “The species rarefaction showed that the sampling was insufficient for direct comparison of observed species richness; therefore we calculated non-parametric species richness estimators (ACE, ICE, Chao1 and 2, Jacknife 1 and 2).”
Host Specificity, Alpha- and Beta-Diversity of Phytophagous Beetles in Two Tropical Forests in Panama (2004, unknown): “However, it is important to be aware of that calculations of beta-diversity of tropical forests tend to overestimate species turnover due to the dominance of rare species (Mawdsley 1996; Stork 1997) and small sample size ( Chao et al. 2000 ).”
Testing the performance of beta diversity measures based on incidence data: the robustness to undersampling (2009, methodology): “…effort for the chosen beta diversity measure to reach a stable, and therefore reliable, value; (ii) by statistically correcting undersampling bias in indices (as in Chao et al., 2000, 2005); or (iii) by explicitly choosing an index that is robust to relatively low levels of sampling effort.”
Sampling bias and the use of ecological niche modeling in conservation planning: a field evaluation in a biodiversity hotspot (2010, methodology): “We used the average of several richness estimators provided by the software (ACE, ICE, Chao1, Chao2, Jack 1, Jack 2, Bootstrap, MMruns, Cole) to estimate species richness based on the sampling (Chazdon et al. 1998; Chao et al. 2000), and performed 10,000 randomizations without replacement.”
A Penalized Nonparametric Maximum Likelihood Approach to Species Richness Estimation (2005, unknown): “As suggested by Chao et al. (1993) and Chao et al. (2000), we split the sample into “rare” (n1–nτ ) and “abundant” (beyond nτ ) species.”
Hull fouling is a risk factor for intercontinental species exchange in aquatic ecosystems (2007, unknown): “2.1 in Chao et al. 2000, cf. Chao and Lee 1992).”
Introducing SONS, a Tool for Operational Taxonomic Unit-Based Comparisons of Microbial Community Memberships and Structures (2006, methodology): “i 1 D12 Yi mtotal ntotal 1 ntotal f1 2f2 i 1 D12 Yi mtotal I Xi 1 (6)”