Estimating divergence times in large molecular phylogenies
By Koichiro Tamura, Fabia Ursula Battistuzzi, Paul Billing-Ross, Oscar Murillo, Alan J. Filipski, Sudhir Kumar. Proceedings of the National Academy of Sciences of the United States of America, 2012
632 citations recorded by the source corpus.
Subfields: Genetics, Molecular Biology, Paleontology
View Paper: https://www.semanticscholar.org/paper/a2229ff8634c9255f27110eab1f33ed90bcc8df1
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Genetics
- Sudhir Kumar
- Glen Stecher
- Koichiro Tamura
- Michael Suleski
- S. Blair Hedges
- Daniel Peterson
- Alan J. Filipski
- Julie Marin
In Molecular Biology
- Sudhir Kumar
- Glen Stecher
- Koichiro Tamura
- Michael Suleski
- S. Blair Hedges
- Alan J. Filipski
- Daniel Peterson
- Julie Marin
In Paleontology
- Glen Stecher
- Koichiro Tamura
- Sudhir Kumar
- S. Blair Hedges
- Daniel Peterson
- Richard A. Neher
- Alan J. Filipski
- Michael Suleski
Citations in the corpus
- MEGA12: Molecular Evolutionary Genetic Analysis Version 12 for Adaptive and Green Computing (2024, neutral): “The EP analysis in MEGA has been updated so that user-provided times, specified as branch lengths in a Newick tree, can be used instead of times computed using RelTime (Tamura et al. 2012).”
- MEGA11: Molecular Evolutionary Genetics Analysis Version 11 (2021, methodology): “MEGA6 first added methods and tools for constructing evolutionary timetrees by implementing the RelTime method, which does not assume a molecular clock (Tamura et al. 2012, 2013).”
- MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. (2016, methodology): “Setting time constraints in order to calibrate the final timetree is optional in the RelTime method (Tamura et al. 2012), so M EGA 7 does not require that calibration constraints be available and it does not assume a molecular clock.”
- Tree of Life Reveals Clock-Like Speciation and Diversification (2014, methodology): “The most common approach for constructing a large timetree using a sequence alignment or super alignment is possible (Smith and O’Meara 2012; Tamura et al. 2012), but not generally practical because of data matrix sparseness.”
- TreeTime: Maximum-likelihood phylodynamic analysis (2017, methodology): “On the other end of the spectrum are much simpler distance based tools that infer time scaled phylogenies orders of magnitudes faster (Britton et al. 2007; Tamura et al. 2012; To et al. 2016; Volz and Frost, 2017).”
- MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. (2013, methodology): “This approach is taken because NTs are already shown to be linearly related with the true time (Tamura et al. 2012).”