Tree of Life Reveals Clock-Like Speciation and Diversification
By S. Blair Hedges, Julie Marin, Michael Suleski, Madeline Paymer, Sudhir Kumar. Molecular biology and evolution, 2014
963 citations recorded by the source corpus.
Genomic data are rapidly resolving the tree of living species calibrated to time, the timetree of life, which will provide a framework for research in diverse fields of science. Previous analyses of taxonomically restricted timetrees have found a decline in the rate of diversification in many groups of organisms, often attributed to ecological interactions among species. Here, we have synthesized a global timetree of life from 2,274 studies representing 50,632 species and examined the pattern and rate of diversification as well as the timing of speciation. We found that species diversity has been mostly expanding overall and in many smaller groups of species, and that the rate of diversification in eukaryotes has been mostly constant. We also identified, and avoided, potential biases that may have influenced previous analyses of diversification including low levels of taxon sampling, small clade size, and the inclusion of stem branches in clade analyses. We found consistency in time-to-speciation among plants and animals, ∼2 My, as measured by intervals of crown and stem species times. Together, this clock-like change at different levels suggests that speciation and diversification are processes dominated by random events and that adaptive change is largely a separate process.
Subfields: Genetics, Molecular Biology, Paleontology
View Paper: https://www.semanticscholar.org/paper/436405bab55a7d8c63077ee5c29e35209d09ac8d
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Genetics
- Sudhir Kumar
- Glen Stecher
- Koichiro Tamura
- Michael Suleski
- S. Blair Hedges
- Maxwell D. Sanderford
- Michael Li
- M. Modi
In Molecular Biology
- Sudhir Kumar
- Glen Stecher
- Koichiro Tamura
- Michael Suleski
- S. Blair Hedges
- Maxwell D. Sanderford
- Michael Li
- Kevin Kaichuang Yang
In Paleontology
- Glen Stecher
- Koichiro Tamura
- S. Blair Hedges
- Sudhir Kumar
- Tim Caro
- William L. Allen
- David Storch
- Walter Jetz
Citations in the corpus
- FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome (2017, background): “human and NONCODE species as given in (69).”
- Inferring the mammal tree: Species-level sets of phylogenies for questions in ecology, evolution, and conservation (2019, methodology): “mately 85 Ma [76, 93]—but note an older placental age with a different tip-dating tree prior”
- Evolutionary velocity with protein language models (2021, positive): “The ordering of the median 201 pseudotimes of different taxonomic classes also recapitulates their known ordering in geologic 202 time based on estimates from the fossil record and molecular clocks [37] (Figures 4E,F and 203”
- TimeTree 5: An Expanded Resource for Species Divergence Times (2022, methodology): “We used the Hierarchical Average Linking (HAL) approach, introduced in (Hedges et al., 2015), 19 to build a super timetree using CTOs.”
- The biology of color (2017, background): “, (83)], and novel methods for quantifying large numbers of diverse color patterns (42, 43), combined with new analytical methods to integrate these data sets (84).”
- The Drosophila Mushroom Body: From Architecture to Algorithm in a Learning Circuit. (2020, background): “Drosophila rely on a brain area known as the mushroom body (MB) for the formation of memories (Heisenberg 2003).”
- MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. (2016, methodology): “In the future, we plan to extend this sys-tem with the capability to automatically retrieve species tree from external databases, including the NCBI Taxonomy (http://www.ncbi.nlm.nih.gov/guide/taxonomy/) and the timetree of life (Hedges et al. 2015).”
- Phylogenetic scale in ecology and evolution (2016, background): “…with thousands of species are often saturated at their equilibrium diversity (Rabosky & Hurlbert, 2015); although cases of expansion in very large clades have also been reported (e.g., birds, tetrapods; Hedges, Marin, Suleski, Paymer, & Kumar, 2015; Jetz, Thomas, Joy, Hartmann, & Mooers, 2012).”