Functional Divergence of Duplicated Genes Formed by Polyploidy during Arabidopsis Evolution

By Guillaume Le Blanc, Kenneth H. Wolfe. The Plant Cell Online, 2004

1,077 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/9da3070a8fde78fdfb789377d37843f757d87a8e

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Citations in the corpus

Evolution of Gene Duplication in Plants1[OPEN] (2016, background): “…data led to the finding that plant genes involved in transcriptional regulation, signal transduction, and stress response tend to have paralogs (Blanc and Wolfe, 2004b; Maere et al., 2005; Shiu et al., 2005; Hanada et al., 2008) but those involved in essential functions, such as genome repair,…”
LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana (2008, methodology): “To further test for diversification in expression patterns on a broader basis [105,107,109,110], we have used the "gene correlator" function on the Genevestigator [111] website, which compares expression patterns from publicly available expression profiling data (Table 6 and 7).”
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome (2010, result): “This finding was supported by analyses of Expressed Sequence Tags (ESTs) [2,3], which suggested an additional duplication event, with estimated times of approximately 14 and 44 mya.”
The evolution of gene regulation by transcription factors and microRNAs (2007, background): “Interestingly, there is evidence that the expansion of transcription-factor families is greater in plants than in animal”
Polyploidy and Crop Improvement (2006, background): “In Arabidopsis, some classes of genes have been preferentially retained whereas other classes have been preferentially lost (Seoighe and Gehring, 2004; Blanc and Wolfe, 2004a; Blanc and Wolfe, 2004b; Chapman et al., 2006).”
Evolutionary genetics of genome merger and doubling in plants. (2008, background): “Evidence from Arabidopsis indicates that gene retention following polyploidy (the Arabidopsis lineage experienced its most recent polyploidy event 20–60 mya) can, to some extent, be explained by expression subfunctionalization (10, 15, 32).”
The Genomes of Oryza sativa: A History of Duplications (2005, background): “In plants, the existence issue is not disputed, as polyploidy is common [48,49,50,51,52,53], but even with complete genome sequence, many details remain obscure.”
Genome-Wide Analysis of the ERF Gene Family in Arabidopsis and Rice[W] (2006, result): “This finding is consistent with a previous report demonstrating that duplicated genes involved in signal transduction and transcription are preferentially retained (Blanc and Wolfe, 2004).”
Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss (2011, background): “Genes encoding proteins with more interaction partners, such as protein kinases and phosphatases, or subunits of complex machines, such as ribosomes, proteasomes, and motors, are predicted (32) to be more dosagesensitive, and these are precisely the classes of genes that aremore likely to be retaine”
The Ancestral Developmental Tool Kit of Land Plants (2007, background): “In addition, it is not clear whether these gene families will be generally representative, because transcription factors may be retained at a higher frequency than other nonregulatory genes following whole-genome duplications (Blanc and Wolfe 2004; Seoighe and Gehring 2004).”
The evolutionary consequences of polyploidy. (2007, background): “, 2003), and evidence for altered patterns of genomic and molecular evolution (Adams and Wendel, 2005; Blanc and Wolfe, 2004; Chen and Ni, 2006).”