Evolutionary genetics of genome merger and doubling in plants.

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Homoeologs: What Are They and How Do We Infer Them? (2016, background): “Accurately identifying homoeologs is key to studying the genetic consequences of polyploidization; knowing the evolutionary correspondence between genes across subgenomes allows us to more accurately estimate gene gain or loss after polyploidization (reviewed in [8,9]) and to study the major structu”
Unfurling Fern Biology in the Genomics Age (2010, background): “Combined with silencing of duplicated genes through mutation or outright loss, the actions of this suite of genomic changes lead to diploidization (Doyle et al. 2008).”
Plant speciation through chromosome instability and ploidy change: Cellular mechanisms, molecular factors and evolutionary relevance (2014, background): “[53] J.”
The genome of the domesticated apple (Malus × domestica Borkh.) (2010, background): “DISCUSSION The putative gene content in apple (57,386 putative genes plus 31,678 transposable element–related ORFs) is high compared to Arabidopsis thaliana (27,228), poplar (45,654), papaya (28,027), Brachypodium distachyon (25,532), grape (33,514), rice (40,577), sorghum (34,496), cucumber (26,682”
The role of hybridization in plant speciation. (2009, background): “Doyle and coworkers (49) recently summarized a suite of critical questions that surround polyploidy and hybridization, with a focus on issues of gene expression, epigenetics, and the fate of duplicate genes.”