Map Manager QTX, cross-platform software for genetic mapping

By K. Manly, Jr. Robert H. Cudmore, J. M. Meer. Mammalian Genome, 2001

1,308 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/9b3f0297bf457584c32cc2d3b636e4225659a58c

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Genetics

In Plant Science

Citations in the corpus

QTLs for powdery mildew resistance in peach ×Prunus davidiana crosses: consistency across generations and environments (2003, methodology): “Linkage analysis was performed with MapMaker (Lander et al. 1987) for the construction of the P. davidiana and the SD40 2 maps and with MapManagerQTXb13 Software ( Manly et al. 2001 ) for the BC2 map construction.”
Marker-Assisted Plant Breeding: Principles and Practices (2015, background): “Marker linkage maps for the programs are constructed by a companion program (Manly et al. 2001).”
Mapping and validation of the genes for resistance to Pyrenophora teres f. teres in barley (Hordeum vulgare L.) (2003, methodology): “…et al. 2003a) and VN (L. C. Emebiri, unpublished data) populations utilising 263 and 250 DNA markers, respectively, were used to identify marker loci associated with resistance to NTNB. QTL analyses were performed using software packages MapManager QTX (Manly et al. 2001) and Qgene (Nelson 1997).”
R/qtl: QTL Mapping in Experimental Crosses (2003, methodology): “There exist numerous computer programs for QTL mapping in experimental crosses, including Mapmaker/QTL (Landeret al., 1987) and Map Manager QTX (Manlyet al., 2001).”
Development of DNA Markers Suitable for Marker Assisted Selection of Three Pi Genes Conferring Resistance to Multiple Pyricularia grisea Pathotypes (2004, neutral): “Plants scored with (Manly et al., 2001).”
Resistance to crown rot in wheat identified through an improved method for screening adult plants (2004, methodology): “For analysis of quantitative crown rot data, simple interval mapping was conducted using Map Manager QTX (Manly et al. 2001).”
Quantitative trait loci analysis of zinc efficiency and grain zinc concentration in wheat using whole genome average interval mapping (2008, methodology): “Map construction The map was constructed using Map Manager QTX [version QTXb20, Manly et al. (2001) ] using Kosambi mapping function with a threshold value of P=0.01.”
SSR Markers Closely Linked to the Pi-z Locus are Useful for Selection of Blast Resistance in a Broad Array of Rice Germplasm (2006, methodology): “Recombination estimates for different generations of progeny (i.e., F2, F3, and F8) were taken into account using the advanced intercross option from the linkage evaluation menu of Map Manager QTX. Recombination distance data (Morgan map units) between resistance genes and markers from separate cros”
Inheritance of Seed Size in Chickpea ('Cicer arietinum' L.) and Identification of QTL Based on 100-seed Weight and Seed Size Index (2010, neutral): “0.23 (Manly et al. 2001).”
A QTL Cluster for Plant Architecture and Its Ecological Significance in Asian Wild Rice (2007, methodology): “…map was constructed based on the segrega- tion of 263 polymorphic markers (150 MITE markers, 110 co-dominant and 3 dominant PCR-based markers) in the 79 lines of a F5 population in the W107RILs by using Map Manager QTX (Manly et al. 2001) and JoinMap version 3.0 (Van Ooijen and Voorrips 2001).”
Genomic Selection Accuracy for Grain Quality Traits in Biparental Wheat Populations (2011, methodology): “Linkage groups were determined by using the Map Manager QTXb20 computer program (Manly et al., 2001) using the Kosambi mapping function with a linkage threshold signifi cance of α = 0.”
MapDisto: fast and efficient computation of genetic linkage maps (2012, neutral): “1987), MapManager (Manly et al. 2001), Gmendel (Holloway and Knapp 1994), JoinMap (Stam 1993), MultiPoint (Mester et al.”
A Novel STS Marker for Polyphenol Oxidase Activity in Bread Wheat (2005, methodology): “Linkage analysis was performed using Map Manager QTX (Manly et al. 2001).”
Molecular mapping of adult plant stripe rust resistance in wheat and identification of pyramided QTL genotypes (2010, methodology): “Linkage groups (LGs) were generated through MAP MANAGER QTX20b (Manly et al. 2001) using the Kosambi (1944) map function.”
Bulked Segregant Analysis Using the GoldenGate Assay to Locate the Rpp3 Locus that Confers Resistance to Soybean Rust in Soybean (2009, methodology): “Map Manager QTX v. b20 (Manly et al., 2001) was used Figure 1.”
QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations (2008, methodology): “Most of the prevalent QTL mapping software such as MapMaker/QTL (Lander et al., 1987), Map Manager (Manly et al., 2001), QTL Express (Seaton et al., 2002), R/qtl (Broman et al., 2003) and WinQTLCart (Wang et al., 2006) were developed and implemented interval mapping (Haley and Knott, 1992; Lander…”