The genome of the domesticated apple (Malus × domestica Borkh.)

By R. Velasco, A. Zharkikh, J. Affourtit, Amit Dhingra, A. Cestaro, A. Kalyanaraman, Paolo Fontana, Satish K. Bhatnagar, M. Troggio, D. Pruss and 76 more. Nature Genetics, 2010

1,991 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/00fb1b1125238b65fa9f346745ad3d1cbc19f0df

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Citations in the corpus

Comparative analysis of rosaceous genomes and the reconstruction of a putative ancestral genome for the family (2011, methodology): “As input data for Circos, the physical positions of markers on the Malus genome were divided by 4 × 10 to obtain a genetic distance equivalent to marker linkage values of the Malus consensus map [29].”
The genome of woodland strawberry (Fragaria vesca) (2010, neutral): “and found in all other rosid genomes, including appl”
LinkImpute: Fast and Accurate Genotype Imputation for Nonmodel Organisms (2015, methodology): “Brie ﬂ y, 100-bp reads generated from both enzymes were aligned to the Malus domestica reference genome version 1.0 (Velasco et al. 2010) using the default parameters in BWA (Li and Durbin 2009).”
Physiological and Molecular Regulation of Adventitious Root Formation (2015, background): “(Velasco et al., 2010), pear (Pyrus bretschneideri) (Wu et al., 2013), peach (Prunus persica) (Verde et al., 2013), walnut (Juglans regia L.) (Wu et al., 2012), chestnut (Castanea mollissima) (Barakat et al., 2009), will allow comparative genomics that will likely help to us understand the genetic…”
15 years of GDR: New data and functionality in the Genome Database for Rosaceae (2018, background): “For Malus × domestica, a de novo assembly of a ‘Golden Delicious’ doubled-haploid apple tree (GDDH13) with 17 pseudomolecules is now available (15) along with three versions of assemblies for the heterozygous apple genome (16).”
Plant microRNAs: new players in functional genomics (2013, neutral): “Newgeneration sequencing (NGS) technologies have been successfully applied in a variety of areas, covering de novo genome sequencing (Velasco et al. 2010; Vogel et al. 2010), genome re-sequencing (Ashelford et al. 2011) (DNA-Seq), transcriptomics (Wei et al. 2011; Hansey et al. 2012;…”