The European Nucleotide Archive in 2019
By C. Amid, Blaise T. F. Alako, Vishnukumar Balavenkataraman Kadhirvelu, Tony Burdett, Josephine Burgin, Jun Fan, Peter W. Harrison, Sam Holt, Abdulrahman Hussein, Eugene Ivanov and 16 more. 2019
100 citations recorded by the source corpus.
Abstract The European Nucleotide Archive (ENA, https://www.ebi.ac.uk/ena) at the European Molecular Biology Laboratory’s European Bioinformatics Institute provides open and freely available data deposition and access services across the spectrum of nucleotide sequence data types. Making the world’s public sequencing datasets available to the scientific community, the ENA represents a globally comprehensive nucleotide sequence resource. Here, we outline ENA services and content in 2019 and provide an insight into selected key areas of development in this period.
Subfields: Ecology, Molecular Biology
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In Ecology
- Kim D. Pruitt
- Adrian M. Altenhoff
- Christophe Dessimoz
- Alex Bateman
- Mark L. Blaxter
- L. Prendini
- A. Vogler
- Paul D. N. Hebert
In Molecular Biology
- Sean R. Eddy
- Eric P. Nawrocki
- Robert D. Finn
- Alex Bateman
- Sam Griffiths-Jones
- Sunghwan Kim
- Christophe Dessimoz
- Evan E. Bolton
Citations in the corpus
- OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more (2020, methodology): “The viral proteomes were obtained from UniProtKB reference proteomes, and the corresponding DNA sequences were obtained from the European Nucleotide Archive (41).”
- BlobToolKit – Interactive Quality Assessment of Genome Assemblies (2019, background): “…used to probe the integrity of genome assemblies, describe the visualizations available and present snapshots of our ongoing BlobToolKit analyses of all eukaryotic genome assemblies available in the European Nucleotide Archive (ENA) (Amid et al. 2019).”
- Rfam 14: expanded coverage of metagenomic, viral and microRNA families (2020, methodology): “The Rfamseq database sequences must also exist in public databases like GenBank or ENA and each seed sequence is automatically checked to ensure that it is a valid subsequence of a publicly available sequence.”
- Database resources of the National Center for Biotechnology Information (2020, methodology): “For example, NCBI manages the GenBank database (3) and participates with the EMBL-EBI European Nucleotide Archive (ENA) (4) and the DNA Data Bank of Japan (DDBJ) (5) as a partner in the International Nucleotide Sequence Database Collaboration (INSDC) (6).”