UniProt: the Universal Protein knowledgebase
By Rolf Apweiler, Amos Bairoch, Cathy H. Wu, W. C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane and 5 more. 2004
8,617 citations recorded by the source corpus.
Subfields: Molecular Biology, Spectroscopy, Computational Biology & Bioinformatics
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Molecular Biology
- Burkhard Rost
- Yang Zhang
- Andrej Sali
- Torsten Schwede
- Ben M. Webb
- David T. Jones
- Jinbo Xu
- Johannes Söding
In Spectroscopy
- Burkhard Rost
- Andrej Sali
- Yana Bromberg
- Weizhong Li
- Adam Godzik
- Lukasz Jaroszewski
- Alex Bateman
- Robert D. Finn
In Computational Biology & Bioinformatics
- Burkhard Rost
- Torsten Schwede
- Yang Zhang
- Michael Heinzinger
- David T. Jones
- Björn Wallner
- Jinbo Xu
- Kevin Kaichuang Yang
Citations in the corpus
- Introducing “best single template” models as reference baseline for the Continuous Automated Model Evaluation (CAMEO) (2019, background): “the same background information such as template information or protein sequences in UniProt.(7) Benchmarking results (predictions,”
- SWISS-MODEL: homology modelling of protein structures and complexes (2018, background): “org/repository) is a database of automatically generated homology models for relevant model organisms and experimental structure information for all sequences in UniProtKB (34).”
- The Universal Protein Resource (UniProt) (2004, methodology): “In 2002, the Swiss-Prot + TrEMBL groups at the SIB (Swiss Institute of Bioinformatics) and EBI (European Bioinformatics Institute) and the PIR (Protein Information Resource) group at Georgetown University Medical Center and National Biomedical Research Foundation joined forces as the UniProt consort”
- NLProlog: Reasoning with Weak Unification for Question Answering in Natural Language (2019, neutral): “, 2006) and UNIPROT (Apweiler et al., 2004).”
- How well can the accuracy of comparative protein structure models be predicted? (2008, methodology): “The template profile database was constructed by clustering the PDB at 95% sequence identity, giving 15,631 template structures (24 Feb 2007 PDB release), with each template profile built using MODELLER’s profile.build command against the UniProt-90 database (Apweiler et al. 2004).”
- G Protein-Coupled Receptors as Targets for Approved Drugs: How Many Targets and How Many Drugs? (2018, background): “To verify which of the druggable genes are in different categories, against the ∼ 1100 druggable genes, we queried lists of all genes annotated as protein kinases (from UniProt) (The UniProt Consortium, 2017), voltage-gated ion channels, ligand-gated ion channels, and transporters (all from GtoPdb) ”
- An annotation management system for relational databases (2004, background): “Some examples of such databases from biology include UniProt [2] and SWISS-PROT [3].”