GMD@CSB.DB: the Golm Metabolome Database

By Joachim Kopka, Nicolas Schauer, S. Krueger, C. Birkemeyer, Björn Usadel, Eveline Bergmüller, Peter Dörmann, Wolfram Weckwerth, Y. Gibon, Mark Stitt and 3 more. Bioinform., 2005

1,297 citations recorded by the source corpus.

Subfields: Molecular Biology, Pharmacology

View Paper: https://www.semanticscholar.org/paper/9c1411c9ebc6260edc5798c9339e189e759b2168

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Citations in the corpus

MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data (2012, background): “MetaboLights is working towards the setup of formal data sharing agreements with major resources such as the HMDB, the Golm Metabolome Database (16), MetabolomeExpress (17) and the Riken Metabolomics Platform (18).”
Metabolomics in pesticide research and development: review and future perspectives (2011, background): “…http://www.drugbank.ca/ Wishart et al. (2006) Golm Metabolome Database http://csbdb.mpimp-golm.mpg.de/csbdb/gmd/gmd.html Kopka et al. (2005) Human Metabolome Database http://www.hmdb.ca/ Wishart et al. (2007) KEGG http://www.genome.jp/kegg/ Kanehisa et al.…”
Metabolomics by Gas Chromatography-Mass Spectrometry: the combination of targeted and untargeted profiling (2016, neutral): “Instead of FAMEs, users can employ linear alkanes that have been defined as the Kovats index (Kovats, 1965).”
Comparative metabolomics and transcriptomics of plant response to Tomato yellow leaf curl virus infection in resistant and susceptible tomato cultivars (2014, background): “%) against the compounds stored in the Golm-Metabolome-Database (GMD, (Kopka et al. 2005).”
Mass spectrometry-based metabolomics. (2007, background): “The Golm metabolome database (GMD) (http://csbdb.mpimpgolm.mpg.de/csbdb/gmd/gmd.html) contains publicly available mass spectra and retention index metabolite (MSRI) libraries and GC-MS metabolic profiles of plant samples (Kopka et al., 2005).”
Computational mass spectrometry for small molecules (2013, methodology): “For comparison, the GMD [66] contains EI fragmentation mass spectra of about 1 600 compounds; and the FiehnLib library contains EI spectra for more than 1 000 metabolites [70].”
Decision tree supported substructure prediction of metabolites from GC-MS profiles (2010, methodology): “…matching of both the RI information and the reference mass spectra stored in dedicated libraries such as the Golm Metabolome Database (GMD) (Kopka et al. 2005, Schauer et al. 2005), Therefore, the lack of chemically synthesized reference substances and of puriﬁed bio-molecules may be seen…”
Comparative Metabolome Analysis of the Salt Response in Breeding Cultivars of Rice (2007, background): “…hand profiling is biased towards those metabolic components from a study that are identified at present, for example those that have been made publicly available in dedicated electronic libraries (Halket et al. 1999, Wagner et al. 2003, Halket et al. 2005, Kopka et al. 2005, Schauer et al. 2005).”
MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics (2006, neutral): “While other omics resources are listed at the top level of this hierarchy, metabolomic data sources are notably missing! In particular, no attempt has been made to store the growing flood of experimental data emerging from high-throughput metabolomic studies in some standardised format in a public D”