A computational pipeline for comparative ChIP-seq analyses

By A. Bardet, Qiye He, J. Zeitlinger, Alexander Stark. 2011

112 citations recorded by the source corpus.

Subfields: Molecular Biology

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In Molecular Biology

1. Dirk Schübeler
2. Jussi Taipale
3. Paul Adrian Ginno
4. P. Beachy
5. Benjamin L. Ebert
6. Siddhartha Jaiswal

Citations in the corpus

• Impact of cytosine methylation on DNA binding specificities of human transcription factors (2017, methodology): “For ChIP-exo peak-calling, we used Peakzilla with default parameters (73).”
• Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq (2013, unknown): “Note that the genome-­‐wide prediction by each method separately requires more stringent thresholds compared to an analysis in which a dataset is evaluated against one set of regions due to multiple-­”