Small libraries of protein fragments model native protein structures accurately.
By Rachel Kolodny, Patrice Koehl, Leonidas J. Guibas, Michael Levitt. 2002
214 citations recorded by the source corpus.
Subfields: Materials Chemistry, Molecular Biology
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Materials Chemistry
- Yang Zhang
- Dong Xu
- Gevorg Grigoryan
- Jianfu Zhou
- Inbal Budowski-Tal
- Yuval Nov
- Robin Pearce
- Jianyi Yang
In Molecular Biology
- Yang Zhang
- Dong Xu
- Gevorg Grigoryan
- Robin Pearce
- Jianfu Zhou
- Jianyi Yang
- Inbal Budowski-Tal
- Yuval Nov
Citations in the corpus
- Toward optimal fragment generations for ab initio protein structure assembly (2012, background): “25,26 Because these fragments are independent of their residue types, they can be placed at any position of the query sequence for folding simulation.”
- Reconstruction of Protein Backbones from the BriX Collection of Canonical Protein Fragments (2008, methodology): “(A) Global fit of the Park & Levitt protein set.”
- FragBag, an accurate representation of protein structure, retrieves structural neighbors from the entire PDB quickly and accurately (2010, methodology): “Methods We consider 24 libraries with 20–600 fragments of 5–12 residues, constructed in a previous study (35).”
- Tertiary alphabet for the observable protein structural universe (2016, background): “(31) created libraries of four- to seven-residue fragment clusters, which were later used to enable rapid search for structural similarity (35).”
- Local Protein Structures (2007, methodology): “[308] have constructed protein structure accurately using these small libraries of protein fragments.”
- Comprehensive structural classification of ligand-binding motifs in proteins. (2008, background): “It is known that a relatively small library of backbone fragments can accurately model tertiary structures of proteins (Kolodny et al., 2002).”