FragBag, an accurate representation of protein structure, retrieves structural neighbors from the entire PDB quickly and accurately

By Inbal Budowski-Tal, Yuval Nov, Rachel Kolodny. 2010

111 citations recorded by the source corpus.

Subfields: Materials Chemistry, Molecular Biology

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Materials Chemistry

1. Gevorg Grigoryan
2. Jianfu Zhou
3. Craig O. Mackenzie

In Molecular Biology

1. Gevorg Grigoryan
2. Jianfu Zhou
3. Craig O. Mackenzie

Citations in the corpus

• The language of proteins: NLP, machine learning & protein sequences (2021, unknown): “Ideally, we would count 3D protein topologies, domains or motifs instead of letters to characterize protein function [20].”
• Tertiary alphabet for the observable protein structural universe (2016, background): “(31) created libraries of four- to seven-residue fragment clusters, which were later used to enable rapid search for structural similarity (35).”