Specialization and evolution of endogenous small RNA pathways

By Elisabeth J. Chapman, James C. Carrington. Nature reviews genetics, 2007

713 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/8758255eb556ceadfef5ea2497103add7539121b

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Citations in the corpus

Lin-28 interaction with the Let-7 precursor loop mediates regulated microRNA processing. (2008, background): “It is now generally appreciated that diverse forms of double-stranded RNA (dsRNA) can act as triggers of RNA interference (RNAi) or related homology-dependent gene silencing pathways (Chapman and Carrington 2007).”
A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). (2009, background): “In plants, naturally occurring siRNAs such as tasiRNA (trans-acting siRNA) and natsiRNA (natural antisense transcripts siRNA) have been discovered (for review, see Chapman and Carrington 2007).”
Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation. (2008, background): “miRNA and tasiRNA are distinct classes of small RNAs that guide silencing of target RNAs through cleavage or nondegradative repression mechanisms (Chapman and Carrington, 2007).”
Plant root growth, architecture and function (2009, background): “However, the discovery of small RNAs (microRNAs, miRNA; and small interfering RNAs, siRNA) in the last decade altered the paradigm that protein coding genes are the only significant components of gene regulatory networks (Chapman and Carrington 2007).”
Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants (2011, neutral): “miRNAs, repeat-associated small interfering RNAs (ra-siRNAs), natural antisense transcript-derived small interfering RNAs (nat-siRNAs), trans-acting small interfering RNAs (ta-siRNAs), heterochromatic small interfering RNAs (hc-siRNAs), secondary transitive siRNA, primary siRNAs, and long small inte”
RNA-Guided RNA Cleavage by a CRISPR RNA-Cas Protein Complex (2009, positive): “…core components of the eukaryotic RNAi machinery has led to a tremendous variety of observed RNA-mediated gene silencing pathways that can act at post-transcriptional or transcriptional levels (Chapman and Carrington, 2007; Zaratiegui et al., 2007; Farazi et al., 2008; Hutvagner and Simard, 2008).”
DNA methylation mediated by a microRNA pathway. (2010, background): “These pathways can be distinguished by their distinct trigger loci and different biogenesis machinery and effector complexes (Chapman and Carrington, 2007).”
Biogenesis of small RNAs in animals (2009, background): “Animal miRNAs seem to have evolved separately from those in plants because their sequences, precursor structure and biogenesis mechanisms are distinct from those in plant”