Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products

By Sergey Nurk, A. Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelski, A. Pyshkin, Alexander Sirotkin, Yakov Sirotkin and 8 more. J. Comput. Biol., 2013

1,116 citations recorded by the source corpus.

Subfields: Ecology, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/80f5bac070a626dafe392744394d49cdb3aa1d87

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Ecology

1. Dmitry Antipov
2. Alla L. Lapidus

In Molecular Biology

1. Alla L. Lapidus
2. Dmitry Antipov
3. Andrey D. Prjibelski
4. Elena Bushmanova

Citations in the corpus

• rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data (2018, positive): “To detect chimeric connections in single-cell assemblies SPAdes implements various algorithms, which mostly rely on the assumption that each chromosome corresponds to a long contiguous path traversing through the de Bruijn graph [14].”
• Sequence Analysis (2020, neutral): “Once constructed, the graph undergoes a basic simplification procedure (Bankevich et al. 2012, Nurk et al. 2013), which removes only edges with extremely low coverage to prune obvious sequencing errors.”