An Exact Nonparametric Method for Inferring Mosaic Structure in Sequence Triplets

By Maciej F. Boni, David Posada, Michal Feldman. Genetics, 2007

763 citations recorded by the source corpus.

Subfields: Genetics, Plant Science

View Paper: https://www.semanticscholar.org/paper/7f6c9b7c2b3f78162dd73b95010050ed681ff7a3

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Genetics

1. Philippe Lemey
2. Andrew Rambaut
3. Maciej F. Boni
4. T. T. Lam
5. Todd A. Castoe
6. Darren P. Martin
7. M. Diallo
8. David L. Robertson

In Plant Science

1. Darren P. Martin
2. Maciej F. Boni
3. Ben Murrell
4. Andrew Rambaut

Citations in the corpus

• RDP4: Detection and analysis of recombination patterns in virus genomes (2015, methodology): “Besides the original RDP method (Martin and Rybicki 2000), these methods include BOOTSCAN (Salminen et al. 1995), MAXCHI (Maynard Smith 1992), CHIMAERA (Posada and Crandall 2001), 3 SEQ (Boni, Posada, and Feldman 2007), GENECONV (Padidam, Sawyer, and Fauquet 1999), LARD (Holmes, Worobey, and Rambaut”
• Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic (2020, methodology): “As 3SEQ is the most powerful the mosaic methods (Boni et al., 2007) , we used 3SEQ to identify the best supported breakpoint history for each potential child (recombinant) sequence in the data set.”
• Molecular Evolution of Zika Virus during Its Emergence in the 20th Century (2014, background): “[32], GENECONV [33], Chimaera [34], MaxChi [35], Bootscan [36], SiScan [37] and 3Seq [38] methods to uncover evidence for recombination events.”