Comparative Genomics in Eukaryotes

By Alan J. Filipski, Sudhir Kumar. 2005

679 citations recorded by the source corpus.

Subfields: Genetics, Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/7e52d44280d6ea31dc939a6766b60304b823b2b7

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Citations in the corpus

OrthoMCL: identification of ortholog groups for eukaryotic genomes. (2003, methodology): “…from the field of molecular systematics (Fitch 1970), and have recently been applied to functional characterizations and classifications on the scale of whole-genome comparisons (Tatusov et al. 1997, 2000, 2001; Chervitz et al. 1998; Mushegian et al. 1998; Wheelan et al. 1999; Rubin et al. 2000 .”
The Diploid Genome Sequence of an Individual Human (2007, background): “These genomic datasets have also enabled the identification of additional functional sequence such as cis-regulatory DNA [24–29] as well as both noncoding and microRNA [30–34] .”
Evolution by gene duplication: an update (2003, neutral): “Helicobacter pylori 1590 266 (17) [66] Haemophilus influenzae 1709 284 (17) [ 67 ]”
The host defense of Drosophila melanogaster. (2007, background): “The completion of the Drosophila genomic sequence in 2000 (6) and the subsequent expansion of new postgenomic technologies including proteomics, microarrays, and RNAi (RNA interference) have considerably widened the possibilities of immune system analysis in this model organism.”
MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes. (2007, background): “S. mediterranea is an emerging model organism for regeneration studies following demonstrations that it is amenable to modern cell (Robb and Sánchez Alvarado 2002), molecular (Sánchez Alvarado et al. 2002), and RNAi (Sánchez Alvarado and Newmark 1999) techniques.”
Similarities and Differences in Genome-Wide Expression Data of Six Organisms (2003, background): “So far, however, such an approach has been mostly applied to small numbers of genes (Carroll 2000; True and Carroll 2002; Wray et al. 2003) or has been restricted to variations in the genome-wide expression profiles during the development of closely related species ( Rifkin et al. 2003 ).”
The Developmental Transcriptome of Drosophila melanogaster (2010, neutral): “Retained/unprocessed introns 1,434 2,679 (5,667) 1,275 (4,263) 2,439 (35,641) 868 (8,998) Total 6,437 23,859 (26,847) 18,369 (21,478) 21,216 (54,418) 13,951 (22,081)”