distruct: a program for the graphical display of population structure

By Noah A. Rosenberg. 2003

5,077 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/7249942327195cd99f998ba6c68b14afef0ecd25

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In Genetics

Citations in the corpus

Genetic diversity and landscape genetic structure of otter (Lutra lutra) populations in Europe (2010, methodology): “The software DISTRUCT 1.1 (Rosenberg 2004; http://rosenberglab.bioinformatics.med. umich.edu/distruct.html) was used to plot the graphical representations of the qi values.”
CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure (2007, methodology): “…fractions of individuals—to clusters (Anderson and Thompson, 2002; Chen et al. , 2006, 2007; Corander and Marttinen, 2006; Corander et al. , 2003, 2004; Dawson and Belkhir, 2001; Falush et al. , 2003; Franc¸ois et al. , 2006; Huelsenbeck and Andolfatto, 2007; Pella and Masuda, 2006; Pritchard et…”
Sex and virulence in Escherichia coli: an evolutionary perspective (2006, methodology): “Proportions of ancestry from groups A, B1, B2 and D as inferred by STRUCTURE and their assignment to six groups as displayed with DISTRUCT (Rosenberg, 2004).”
pong: fast analysis and visualization of latent clusters in population genetic data (2015, methodology): “CLUMPAK automatically runs CLUMPP (Jakobsson and Rosenberg, 2007) for each value of K as part of its pipeline, and produces visualizations within and across values of K using DISTRUCT (Rosenberg, 2004), displaying one barplot per mode.”
Acute survivorship of the deep-sea coral Lophelia pertusa from the Gulf of Mexico under acidification, warming, and deoxygenation (2014, methodology): “The software CLUMPP v.1.2 (Jakobsson and Rosenberg, 2007) was used to merge the results of the 20 runs per K. DISTRUCT v.1.1 (Rosenberg, 2004) were used to visualize merged run results.”
The computer program STRUCTURE does not reliably identify the main genetic clusters within species: simulations and implications for human population structure (2011, background): “The standard output of STRUCTURE—a color-coded plot of the ancestry of each individual (Rosenberg, 2004)—contains only a limited amount of information regarding population structure.”
The challenge of understanding the origin, pathways and extent of fungal invasions: global populations of the Neofusicoccum parvum–N. ribis species complex (2013, neutral): “Distruct (Rosenberg, 2004) was used to generate a visual interpretation of the population assignments of each individual.”
pophelper: an R package and web app to analyse and visualize population structure (2017, methodology): “Two common down-stream approaches are to align assignment clusters across replicate runs using CLUMPP (Jakobsson & Rosenberg 2007) and to visualize the output using DISTRUCT (Rosenberg 2004).”
Genetic Diversity, Population Structure, Parentage Analysis, and Construction of Core Collections in the French Apple Germplasm Based on SSR Markers (2016, methodology): “The graphical display of the STRUCTURE results was generated using DISTRUCT software, version 1.1 (Rosenberg 2004) (http://www. stanford.edu/group/rosenberglab/distruct.html).”
STRUCTURE PLOT: a program for drawing elegant STRUCTURE bar plots in user friendly interface (2014, methodology): “CLUMPP results are used to generate bar graphs using DISTRUCT (Rosenberg 2004) program.”
Hybridization between a native and introduced predator of Adelgidae: an unintended result of classical biological control. (2012, methodology): “CLUMPP 1.1.2 (Jakobsson and Rosenberg, 2007) was used to combine results from five runs with the resulting optimal value of K. Graphical displays were created using DISTRUCT 1.1 (Rosenberg, 2004).”
Clumpak: a program for identifying clustering modes and packaging population structure inferences across K (2015, methodology): “…of results obtained for multiple model choices, subsets of data, or different programs altogether, have also required that computations be performed external to C LUMPP and other cluster postprocessing software such as D ISTRUCT (Rosenberg 2004) and S TRUCTURE H ARVESTER (Earl & Vonholdt 2012).”
Continental‐scale assessment of genetic diversity and population structure in quaking aspen (Populus tremuloides) (2013, methodology): “All structure results were plotted using distruct 1.1 (Rosenberg, 2004).”
fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets (2014, methodology): “Figure 4 illustrates the admixture proportions estimated by the different algorithms on both data sets at two values of K , using Distruct plots (Rosenberg 2004).”
Community Resources and Strategies for Association Mapping in Sorghum (2008, positive): “A graphical display of subpopulation composition was generated with DISTRUCT (Rosenberg, 2004).”