BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data
By L. Saal, C. Troein, J. Vallon-Christersson, Sofia Gruvberger, Å. Borg, C. Peterson. Genome Biology, 2002
496 citations recorded by the source corpus.
The microarray technique requires the organization and analysis of vast amounts of data. These data include information about the samples hybridized, the hybridization images and their extracted data matrices, and information about the physical array, the features and reporter molecules. We present a web-based customizable bioinformatics solution called BioArray Software Environment (BASE) for the management and analysis of all areas of microarray experimentation. All software necessary to run a local server is freely available.
Subfields: Molecular Biology
View Paper: https://www.semanticscholar.org/paper/62d647751993f0e5a68bed9a09669bb4d2ff67bf
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Citations in the corpus
- Reduced atherosclerosis in MyD88-null mice links elevated serum cholesterol levels to activation of innate immunity signaling pathways (2004, methodology): “A GenePix 4000B microarray scanner and software (Axon Instruments) were used to quantify the microarrays, and data were analyzed using the BioArray Software Environment (BASE”
- METLIN: A Metabolite Mass Spectral Database (2005, background): “previously been leveraged for a scalable and robust DNA microarray database.(24) Because of its high resolution, FTMSm/z and intensity data are stored in binary, flat file format.”