DNA-based methods for pedigree reconstruction and kinship analysis in natural populations

By Michael S. Blouin. 2003

658 citations recorded by the source corpus.

Subfields: Ecology, Evolution, Behavior and Systematics, Genetics

View Paper: https://www.semanticscholar.org/paper/5f49986defb7e92dc730c77a80c9bf7b6a7df437

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In Ecology, Evolution, Behavior and Systematics

In Genetics

Citations in the corpus

Can't get there from here: inferring kinship from pairwise genetic relatedness (2008, methodology): “However, each of these methods (e.g. Queller & Goodnight 1989; Lynch & Ritland 1999; Wang 2002) has inherent limitations (see discussions in van de Casteele et al. 2001; Thomas et al. 2002; Wang 2002; Blouin 2003; Thomas 2005; Fernández & Toro 2006).”
Evolutionary ecology of social and sexual systems : crustaceans as model organisms (2007, background): “Subscriber: HINARI; date: 19 December 2018 relatedness for many pairs of individuals (Blouin 2003).”
Genomics and the future of conservation genetics (2010, background): “As a result, a more powerful application of genomics may be to estimate pedigrees and degrees of relatedness among captive or founding individual”
COLONY: a program for parentage and sibship inference from multilocus genotype data (2010, neutral): “There are a number of computer programs available to conduct pedigree inference (Blouin 2003; Jones & Wang in press).”
Applications of Linkage Disequilibrium and Association Mapping in Crop Plants (2007, positive): “The relatedness amongst the individuals forming the population can be either estimated using pedigrees (Emik and Terrill 1949) or inferred using molecular markers (Blouin 2003; Lynch and Ritland 1999; Oliehoek et al. 2006; Wang 2002).”
Sibship reconstruction from genetic data with typing errors. (2004, neutral): “In mation (Blouin 2003).”
Revising how the computer program cervus accommodates genotyping error increases success in paternity assignment (2007, background): “Genetic data are frequently used to estimate genealogical relationships among individuals (see Blouin 2003 for review), and such analyses have provided remarkable insight to the reproductive lives of plants and animals.”
Genomic selection in forest tree breeding: the concept and an outlook to the future (2014, background): “…reconstruction in tree breeding programs Discovery of microsatellite and SNP markers during the last decade opened new opportunities for biologists to study inheritance, evolutionary history, inbreeding, gene flow and conservation of wild and domesticated populations (Blouin 2003; Pemberton 2008).”
The reintroduction of the Eurasian otter (Lutra lutra) into the Netherlands: hidden life revealed by noninvasive genetic monitoring (2010, methodology): “Since all potential parents were known, we applied complete exclusion as our method of parentage analysis (Blouin 2003; Jones and Ardren 2003).”
kingroup: a program for pedigree relationship reconstruction and kin group assignments using genetic markers (2004, methodology): “Suitable molecular markers have become more readily available, and methods for using such information to greatest effect need to be developed and improved (Blouin 2003; Jones & Ardren 2003).”
Genetic diversity and gene flow between the wild olive (oleaster, Olea europaea L.) and the olive: several Plio‐Pleistocene refuge zones in the Mediterranean basin suggested by simple sequence repeats analysis (2006, background): “Homoplasy in chloroplast and in nuclear SSR could modify our conclusions substantially (Blouin, 2003). structure results may be invalid in the presence of population structure.”
What can genetics tell us about population connectivity? (2010, background): “Single-generation dispersal distances can also be estimated using multi-locus genotypes to identify the parents of individuals, assuming that offspring were born at or near the location of the parents when sampling occurred (Blouin 2003).”
Assignment methods: matching biological questions with appropriate techniques. (2005, methodology): “Blouin [ 62 ] recently reviewed DNA-based methods for the”
Noninvasive sampling and genetic variability, pack structure, and dynamics in an expanding wolf population (2014, background): “2008), pushing the development of novel computational methods (Blouin 2003).”
Close-Kin Mark-Recapture (2016, background): “…Molecular Geneticist, Southwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, 110 Shaffer Road, Santa Cruz, California 95060, USA (e-mail: Eric.Anderson@noaa.gov). lar in wildlife studies (Blouin, 2003, Lukacs and Burnham, 2005).”
THE MOLECULAR TOOLBOX: GENETIC TECHNIQUES IN WILDLIFE ECOLOGY AND MANAGEMENT (2005, background): “Typically, estimators of related- ness have a high variance and cannot always determine the exact relationship between individuals, but relatedness estimators can be very useful for comparison among groups (Van De Casteele et al. 2001, Blouin 2003).”
Plant Parentage, Pollination, and Dispersal: How DNA Microsatellites Have Altered the Landscape (2010, methodology): “A detailed review of methods of parentage analysis is beyond the scope of this paper, and I refer readers to several recent reviews on the subject (Blouin, 2003; Jones and Ardren, 2003; Jones et al., 2010).”
Constraints on control: factors influencing reproductive success in male mandrills (Mandrillus sphinx) (2005, positive): “IBD (identical by descent) coefficients of relatedness were calculated first for each pair of potentialmates (a dam and a given dominant male) for each of the 193 potential conceptions (Blouin, 2003).”
Origin, evolution and genome distribution of microsatellites (2006, background): “In general, only 30-40 microsatellite loci are needed to provide a satisfactory estimate of relationship (Blouin, 2003).”