The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
By Amos Bairoch, Rolf Apweiler. 2000
3,125 citations recorded by the source corpus.
Subfields: Molecular Biology, Spectroscopy
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Molecular Biology
- Burkhard Rost
- Paul D. Thomas
- Huaiyu Mi
- Yana Bromberg
- Anushya Muruganujan
- Kuo-Chen Chou
- Peer Bork
- Henrik Nielsen
In Spectroscopy
- Burkhard Rost
- Steven Henikoff
- Pauline Crystal Ng
- J. Castresana
- Yana Bromberg
- Søren Brunak
- Mark Yandell
- Jinfeng Liu
Citations in the corpus
- Six-fold speed-up of Smith-Waterman sequence database searches using parallel processing on common microprocessors (2000, methodology): “The SWISS-PROT (Bairoch and Apweiler, 2000) release 38 protein database, containing 80 000 sequences with a total of 29 085 965 amino-acid residues, was searched.”
- Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. (2000, methodology): “1998), and protein sequences were obtained from the submitting author’s translations or from the SwissProt database (Bairoch and Apweiler 1998).”
- InterPro-an integrated documentation resource for protein families, domains and functional sites (2000, methodology): “Individual InterPro entries contain: a list of member database signatures, HMMs, profiles or fingerprints associated with the entry; an abstract describing the family, domain, repeat or PTM, derived from merged annotation from the member databases; examples of representative sequences; literature refe”
- Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs (2003, methodology): “All protein sequences were collected from the SWISS-PROT database (Bairoch and Apweiler, 2000) release 39.0.”
- CDART: protein homology by domain architecture. (2002, methodology): “This tool is unique in that it includes domain definitions from Pfam B, which is a computationally generated, uncu-rated SWISS-PROT protein database (Bairoch and Apweiler 2000) and does not explicitly search SMART.”
- MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes. (2007, methodology): “…the 128,339 SNAP predictions not overlapping a MAKER annotation for protein homology with SWISS-PROT (Bairoch and Apweiler 2000) and for Pfam (Bateman et al. 2004) domains using the same significance thresholds; 378 of them were homologous to SWISS-PROT proteins, and 1633 had one or more…”