hybridSPAdes: an algorithm for hybrid assembly of short and long reads

592 citations recorded by the source corpus.

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

The design and construction of reference pangenome graphs with minigraph (2020, background): “[50] proved that alignment against cyclic graphs can be done in polynomial time.”
metaSPAdes: a new versatile metagenomic assembler. (2017, methodology): “. exSPAnder (Prjibelski et al. 2014; Vasilinetc et al. 2015; Antipov et al. 2016) is a module of SPAdes that combines various sources of information (e.g., paired reads or long error-prone reads) for resolving repeats and scaffolding in the assembly graph.”
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation (2016, methodology): “Hybrid methods use single-molecule reads to reconstruct the long-range structure of the genome, but rely on complementary short reads for accurate base calls (Koren et al. 2012; Hackl et al. 2014; Lee et al. 2014; Salmela and Rivals 2014; Antipov et al. 2016; Ye et al. 2016).”