APD: the Antimicrobial Peptide Database

By Zhe Wang, Guangshun Wang. Nucleic Acids Res., 2004

845 citations recorded by the source corpus.

Subfields: Microbiology, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/48fa4530c0eddf525b273e222753c978606243f7

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Citations in the corpus

iAMP-2L: a two-level multi-label classifier for identifying antimicrobial peptides and their functional types. (2013, methodology): “The drawing was made based on the data from [6,7].”
Designing antimicrobial peptides: form follows function (2011, background): “The Antimicrobial Peptides Database (APD) 75 , and later the updated APD2 (REF.”
Describing the Mechanism of Antimicrobial Peptide Action with the Interfacial Activity Model (2010, neutral): “From databases of AMP sequences (6, 7), we observe that the basic amino acids, Arg and Lys, are roughly 50% more abundant in AMPs than in genomes overall, while the acidic amino acids, Glu and Asp, are 75% less abundant than expected.”
LAMP: A Database Linking Antimicrobial Peptides (2013, background): “There are 3,706 links to the CAMP and 1,972 links to the APD.”
Antimicrobial peptides: key components of the innate immune system (2012, background): “Since then, more than 1400 AMPs have been isolated from bacteria, insects and other invertebrates, amphibians, birds, fishes, mammals, and plants (Wang and Wang, 2004; Wang et al., 2009a; Thomas et al., 2010).”
CAMP: a useful resource for research on antimicrobial peptides (2009, background): “Although Antimic (47), AMPer (48) and APD (14) are databases of AMPs, which include information of all classes of AMPs, APD (45) is the lone database that is currently available.”
Analysis and prediction of antibacterial peptides (2007, methodology): “The information about these peptides has been collected and compiled; following are major databases on antimicrobial peptides I) ANTIMIC have around 1700 sequences [18] ii) AMSDb consists 804 antimicrobial peptides of eukaryotic origin [19], iii) Peptaibol consists of around 300 antibiotic peptides ”
Peptide Antimicrobial Agents (2006, background): “Antimicrobial peptides are typically relatively short (12 to 100 amino acids), are positively charged (net charge of 2 to 9), are amphiphilic, and have been isolated from single-celled microorganisms, insects and other invertebrates, plants, amphibians, birds, fish, and mammals, including humans (15”
APD3: the antimicrobial peptide database as a tool for research and education (2015, methodology): “Based on the 525 entries in the APD (16), Loose developed the Grammar approach (41).”
APD2: the updated antimicrobial peptide database and its application in peptide design (2008, methodology): “For new users, please also read our original article (6) or read ‘About’ (a brief guide to APD2) online, as the previously described functions and findings are not reiterated here.”