STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins

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A saturation mutagenesis approach to understanding PTEN lipid phosphatase activity and genotype-phenotypes relationships (2018, methodology): “Secondary structure assignments were enumerated with STRIDE.(42) Pymol was used”
Crystal structure of a soluble cleaved HIV-1 envelope trimer (2013, positive): “Secondary structure was determined using STRIDE (71).”
Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment (2013, methodology): “where F q i, k (or P t j, k) is the i,k-th (j,k-th) element in the query PSFM (or the template PSSM); s q i (or s t j ) 2 fH,E,Cg is the three-state secondary structure (‘H’1⁄4 alpha helix, ‘E’1⁄4beta strand and ‘C’1⁄4 random coil) of i-th (or j-th) residue in the query (or template); the secondary ”
The Structure, Stability and Pheromone Binding of the Male Mouse Protein Sex Pheromone Darcin (2014, methodology): “Secondary structure of darcin and MUP11 NMR structures were calculated using STRIDE webserver [39,40].”
RaptorX-Property: a web server for protein structure property prediction (2016, methodology): “Also different annotation criteria, such as STRIDE and DSSP, may have different secondary structure assignment (34).”
A Unified Conformational Selection and Induced Fit Approach to Protein-Peptide Docking (2013, positive): “8 the semi-flexible solvent layer to A˚ secondary structure of the peptides was assigned with STRIDE [54].”