Marnix H. Medema
Molecular Biology · 2011–2023
A researcher in the Science corpus: 20 papers; trusts 8 researchers and is trusted by 8 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 305 citations into it; #4,874 of 17,773 by trust here, #2,147 by citations
- Pharmacology — 80 citations into it; #140 of 1,112 by trust here, #25 by citations
- Computational Biology & Bioinformatics — 36 citations into it
Whom Marnix H. Medema trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Robert C. Edgar
- Christiam Camacho
- Li Li
- Christian Rausch
- Sean R. Eddy
- Ben C. Stöver
- Morgan N. Price
- Kai Blin
- George F. Coulouris
- Tilmann Weber
Who trusts Marnix H. Medema overall
- Kai Blin
- Peter Cimermancic
- Cameron L. M. Gilchrist
- Mohamed S. Donia
- Nadine Ziemert
- C. Brinkmann
- Tilmann Weber
- Michael A. Fischbach
- Y. Chooi
- Amberlee Marker
Papers from Marnix H. Medema's perspective
Ordered by how strongly the researchers Marnix H. Medema trusts endorse each paper. Same corpus, a different order for every researcher.
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
- Basic local alignment search tool.
- OrthoMCL: identification of ortholog groups for eukaryotic genomes. (Genome Research)
- A genomic catalog of Earth’s microbiomes (Nature Biotechnology)
- The Pfam protein families database
- Identifying bacterial genes and endosymbiont DNA with Glimmer (Bioinform.)
- Artemis: sequence visualization and annotation (Bioinform.)
- SMURF: genomic mapping of fungal secondary metabolite clusters (Fungal Genetics and Biology)
- Minimum Information about a Biosynthetic Gene cluster (Nature Chemical Biology)
- TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses (BMC Bioinformatics)
Their papers
- Detecting Sequence Homology at the Gene Cluster Level with MultiGeneBlast (2013) — 328 citations
- antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers (2013) — 826 citations
- antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences (2011) — 1,865 citations
- antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification (2017) — 1,092 citations
- NRPSpredictor2—a web server for predicting NRPS adenylation domain specificity (2011) — 588 citations
- Structure and function of the global topsoil microbiome (2018) — 2,056 citations
- Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters. (2014) — 897 citations
- Computational approaches to natural product discovery (2015) — 440 citations
- Minimum Information about a Biosynthetic Gene cluster (2015) — 802 citations
- antiSMASH 6.0: improving cluster detection and comparison capabilities (2021) — 2,196 citations
- MIBiG 2.0: a repository for biosynthetic gene clusters of known function (2019) — 537 citations
- A computational framework to explore large-scale biosynthetic diversity (2019) — 819 citations
- MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters (2022) — 357 citations
- The Natural Products Atlas: An Open Access Knowledge Base for Microbial Natural Products Discovery (2019) — 353 citations
- antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline (2019) — 2,482 citations
- MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools (2019) — 330 citations
- antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters (2015) — 1,741 citations
- Artificial Intelligence For Natural Product Drug Discovery (2023) — 341 citations
- Towards the sustainable discovery and development of new antibiotics (2021) — 899 citations
- Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome (2019) — 914 citations