Daniel Machado
Molecular Biology · 2014–2020
A researcher in the Science corpus: 3 papers; trusts 22 researchers and is trusted by 0 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 76 citations into it
- Biomedical Engineering — 18 citations into it
Whom Daniel Machado trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Radhakrishnan Mahadevan
- Bernhard O. Palsson
- Adam M. Feist
- Tomer Shlomi
- Scott A. Becker
- C. Schilling
- Sriram Chandrasekaran
- Minoru Kanehisa
- Rasmus Agren
- Ali R. Zomorrodi
Papers from Daniel Machado's perspective
Ordered by how strongly the researchers Daniel Machado trusts endorse each paper. Same corpus, a different order for every researcher.
- KEGG: Kyoto Encyclopedia of Genes and Genomes (Nucleic Acids Res.)
- BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models
- Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0 (Nature Protocols)
- A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information (Molecular Systems Biology)
- Network-based prediction of human tissue-specific metabolism (Nature Biotechnology)
- Understanding variable importances in forests of randomized trees
- The effects of alternate optimal solutions in constraint-based genome-scale metabolic models. (Metabolic Engineering)
- Reconstruction of Biochemical Networks in Microbial Organisms (Nature Reviews Microbiology)
- Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth (Nature)
- Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox (Nature Protocols)
Their papers
- Systematic Evaluation of Methods for Integration of Transcriptomic Data into Constraint-Based Models of Metabolism (2014) — 406 citations
- Fast automated reconstruction of genome-scale metabolic models for microbial species and communities (2018) — 625 citations
- MEMOTE for standardized genome-scale metabolic model testing (2020) — 443 citations