STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene.

By Berend Snel, G. Lehmann, Peer Bork, Martijn A. Huynen. Nucleic Acids Research, 2000

1,186 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/3d3dac20b27cf02991ab08e17090a731a44ae714

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Citations in the corpus

The Proteomics Protocols Handbook (2005, methodology): “Zwitterionic detergents have been synthesized and used to solubilize membrane proteins (13,55,58).”
STRING 7—recent developments in the integration and prediction of protein interactions (2006, background): “STRING has grown from a purely predictive resource covering mainly prokaryotes (12) to a comprehensive tool integrating protein association information from all domains of life (Figure 1).”
Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context. (2001, methodology): “The STRING web server for detection of conserved gene clusters in multiple genomes has been described (Snel et al. 2000).”
STRING 8—a global view on proteins and their functional interactions in 630 organisms (2008, background): “Since its first release in 2000 (6), it has grown into the most comprehensive resource of its type.”
STRING: a database of predicted functional associations between proteins (2003, background): “Previous genomic context databases such as Indigo (13), the first version of STRING (14), the Clusters of Orthologous Group (COG) database (15), Predictome (16), and SNAPper (17) only rely on a single form of genomic”
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets (2018, background): “STRING is one of the earliest efforts (28) and strives to differentiate itself mainly through (i) high coverage, (ii) ease of use and (iii) a consistent scoring system.”
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible (2016, methodology): “STRING has been maintained continuously since the year 2000, and has already been described in several publications (31–34).”
Computational tools for prioritizing candidate genes: boosting disease gene discovery (2012, background): “Subsequently, analysis of the STRING network for the newly identified genes and the seed genes identified a dense subnetwork containing most of those genes and an additional 66 promising candidates across the whole genome.”
Comparative Genomics in Eukaryotes (2005, methodology): “In the past, methods have been developed to predict functional associations between gene pairs in prokaryotes (Huynen and Bork, 1998; Marcotte et al., 1999; Overbeek et al., 1999; Pellegrini et al., 1999; Snel et al., 2000).”
Data Mining Techniques for the Life Sciences (2010, methodology): “STRING STRING was first introduced in the year 2000 (50) and evolved from a Web server of predicted functional association between proteins into a comprehensive Web portal of protein–protein interactions (28, 51).”