MouseMine: a new data warehouse for MGI

By Howie Motenko, Steven B. Neuhauser, M. O’Keefe, J. Richardson. 2015

136 citations recorded by the source corpus.

MouseMine (www.mousemine.org) is a new data warehouse for accessing mouse data from Mouse Genome Informatics (MGI). Based on the InterMine software framework, MouseMine supports powerful query, reporting, and analysis capabilities, the ability to save and combine results from different queries, easy integration into larger workflows, and a comprehensive Web Services layer. Through MouseMine, users can access a significant portion of MGI data in new and useful ways. Importantly, MouseMine is also a member of a growing community of online data resources based on InterMine, including those established by other model organism databases. Adopting common interfaces and collaborating on data representation standards are critical to fostering cross-species data analysis. This paper presents a general introduction to MouseMine, presents examples of its use, and discusses the potential for further integration into the MGI interface.

Subfields: Information Systems, Molecular Biology, Signal Processing

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Information Systems

1. Judith A. Blake
2. Karen R. Christie

In Molecular Biology

1. Cynthia L. Smith
2. Judith A. Blake
3. Karen R. Christie
4. Janan T. Eppig
5. Gene Ontology Consortium
6. Kuo-Chen Chou
7. Peter N. Robinson
8. Stefan Mundlos

In Signal Processing

1. Judith A. Blake
2. Karen R. Christie

Citations in the corpus

• Mouse Genome Database (MGD)-2017: community knowledge resource for the laboratory mouse (2016, background): “Other database resources coordinated through the MGI consortium include the Gene Expression Database (GXD) (3), the Mouse Tumor Biology Database (MTB) (4), the Gene Ontology project (GO) (5), Mouse Mine (6) and the MouseCyc database of biochemical pathways (7).”
• Sensing the cilium, digital capture of ciliary data for comparative genomics investigations (2018, methodology): “Mouse genes corresponding to the human genes on the SYSCILIA gold standard were identified using MouseM-ine [46, 47], which included homology data from both PANTHER [48] and HomoloGene [49] resources.”
• Mouse Genome Database (MGD) 2019 (2018, background): “Gene model structure details and sequences for all 19 annotated mouse genomes are also accessible from MGI’s MouseMine (http://www.mousemine.org) through its user interface and web services (MouseMine web services back the Multiple Genome Viewer).”
• Mouse Genome Database (MGD)-2018: knowledgebase for the laboratory mouse (2017, background): “Other database resources coordinated through the MGI consortium include the Gene Expression Database (GXD) (10), the Mouse Tumor Biology Database (MTB) (11), the Gene Ontology project (GO) (12), MouseMine (13), the International Mouse Strain Resource (IMSR) (14) and the CrePortal database of recombi”