Clustal W and Clustal X version 2.0
By Mark A. Larkin, G. Blackshields, N. P. Brown, R. Chenna, P. McGettigan, Hamish McWilliam, F. Valentin, Iain M. Wallace, Andreas Wilm, Rodrigo Lopez and 3 more. 2007
27,603 citations recorded by the source corpus.
Subfields: Computer Networks and Communications, Information Systems and Management, Molecular Biology
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Computer Networks and Communications
- Torsten Schwede
- Bowen Jin
- Olivier Gascuel
- Shengyou Huang
- Rob Knight
- Lior S. Pachter
- Pei-Zhang Zhou
- Yang Zhang
In Information Systems and Management
- Asha J. Dissanayake
- K. D. Hyde
- Paul J. McMurdie
- Kazutaka Katoh
- Susan P. Holmes
- F. Cai
- Irina S Druzhinina
In Molecular Biology
- Kazutaka Katoh
- Rob Knight
- Hiroyuki Toh
- J. Gregory Caporaso
- Randy J. Read
- C. Lauber
- Torsten Schwede
- Noah Fierer
Citations in the corpus
- Improvement of molecular-replacement models with Sculptor (2011, methodology): “(iii) ClustalW (Larkin et al., 2007) sequence-based alignments were used to explore the effect of common alignment errors.”
- Cylindrocarpon root rot: multi-gene analysis reveals novel species within the Ilyonectria radicicola species complex (2011, methodology): “Consensus sequences for all isolates were compiled into a single file (Fasta format) and aligned using CLUSTAL X v. 2.0.11 (Larkin et al. 2007).”
- Isolation of Paenibacillus sp. and Assessment of its Potential for Enhancing Mineral Weathering (2012, methodology): “The target 16S rRNA gene sequence and the retrieved reference sequences were compared by the ClustalX program (Larkin et al. 2007) with parameters set to default values.”
- Multigene phylogeny of the family Cordycipitaceae (Hypocreales): new taxa and the new systematic position of the Chinese cordycipitoid fungus Paecilomyces hepiali (2020, neutral): “0 and MEGA6 (Larkin 2007; Tamura et al.”
- Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework (2008, methodology): “We also compared purely sequence-based methods, ClustalW [48], ProbConsRNA [29] and MAFFT-G-INS-i [22], in order to clarify the effect of the inclusion of structural information.”
- CRISPRDetect: A flexible algorithm to define CRISPR arrays (2016, methodology): “These repeated words are then aligned using ClustalW [47] and used to try and increase the initial repeat length of likely arrays as well as to eliminate simple tandem repeats.”