Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

By Michael J. Moore, Pamela S. Soltis, C. Bell, J. Burleigh, D. Soltis. Proceedings of the National Academy of Sciences of the United States of America, 2010

651 citations recorded by the source corpus.

Subfields: Ecology, Evolution, Behavior and Systematics, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/35094c8998fb82d27b5c8e7b05501335d79c815f

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Citations in the corpus

Angiosperm phylogeny: 17 genes, 640 taxa. (2011, neutral): “One concern with the complete plastid genome analysis of angiosperms by Moore et al. (2010) is that only 86 taxa were employed, raising questions regarding the impact of taxon density on the topology.”
Phylogenetic Analysis of the Plastid Inverted Repeat for 244 Species: Insights into Deeper-Level Angiosperm Relationships from a Long, Slowly Evolving Sequence Region (2011, methodology): “Likewise, plastid phylogenomics has further refined Eudicotyledoneae relationships, revealing that Pentapetalae comprise two major clades: a superrosid clade consisting of Rosidae, Saxifragales, and Vitaceae and a superasterid clade consisting of Berberidopsidales, Santalales, Caryophyllales, and As”
The tomato genome sequence provides insights into fleshy fruit evolution (2012, neutral): “2B), suggesting that this event may have contributed to formation of major eudicot lineages in a short period of several million years 14 , partially explaining the explosive radiation of angiosperm plants on earth 15 .”
Phylotranscriptomic analysis of the origin and early diversification of land plants (2014, methodology): “Relationships within the magnoliid, monocot, and eudicot clades are largely in line with previously published analyses (14, 108), with the exception of the placement of Vitis as sister to the rest of the core eudicots including rosids, asterids, and Caryophyllales (Figs.”
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes (2018, background): “So far, organelle DNA markers have been the most widely used for phylogenies [4-8] and DNA barcoding [9-12].”
Angiosperm phylogeny inferred from sequences of four mitochondrial genes (2010, methodology): “All other relationships among the major lineages of mesangiosperms have been resolved only in three recent chloroplast phylogenomic analyses (Jansen et al., 2007; Moore et al., 2007, 2010).”
CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences (2012, methodology): “Background Regions on chloroplast genomes have been widely used as phylogenetic [1,2] and DNA barcoding markers [3-5] to determine the phylogenetic relationships of organisms and the identity of particular DNA samples.”