Angiosperm phylogeny: 17 genes, 640 taxa.

By D. Soltis, Stephen A. Smith, Nico Cellinese, Kenneth J Wurdack, David C. Tank, S. F. Brockington, Nancy F Refulio-Rodriguez, Jay B. Walker, M. J. Moore, Barbara S Carlsward and 18 more. American-Eurasian journal of botany, 2011

639 citations recorded by the source corpus.

Subfields: Ecology, Evolution, Behavior and Systematics, Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/b4d405e4ff87a5df3e2f560a2b146b488abf5150

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Citations in the corpus

Phylotranscriptomic analysis of the origin and early diversification of land plants (2014, background): “Relationships within the magnoliid, monocot, and eudicot clades are largely in line with previously published analyses (14, 108), with the exception of the placement of Vitis as sister to the rest of the core eudicots including rosids, asterids, and Caryophyllales (Figs.”
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes (2018, background): “…presence and high copy numbers in the cell (individual organelles contain numerous plastome and/or mitogenome copies), organelle DNA markers and genome sequences are easily obtained and have been extensively used for phylogenetic and evolutionary analyses [4 – 8] and DNA barcoding [9 – 12].”
Constructing a broadly inclusive seed plant phylogeny. (2018, methodology): “For each supermatrix, we constructed phylogenetic trees using RAxML v. 8.2.11 (Stamatakis, 2014) using the GTR+Γ molecular model partitioned by gene region.”
Functional distinctiveness of major plant lineages (2014, methodology): “With regard to higher lineage names above the level of genus, we followed APG III (Chase et al. 2009) for ordinal level and below and followed Cantino et al. (2007) and Soltis et al. (2011) for above ordinal level as applicable.”
A metacalibrated time-tree documents the early rise of flowering plant phylogenetic diversity. (2015, methodology): “A topological constraint specifying relationships among major angiosperm clades according to a recent angiosperm-wide phylogenetic analysis based on a larger molecular data set (Soltis et al., 2011) was implemented.”
Tree of life for the genera of Chinese vascular plants (2016, background): “54 (4): 277–306, 2016 www.jse.ac.cn respectively, in previous studies (e.g., Soltis et al., 2007, 2011; Wang et al., 2009).”
Phylogenetic and functional alpha and beta diversity in temperate and tropical tree communities (2012, methodology): “…values of this metric, when presences-absence data are used, are 310 strongly correlated with two other presence-absence phylogenetic beta diversity metrics, 311 UniFrac (Lozupone and Knight 2005) and PhyloSor (Bryant et al. 2008), which are 312 themselves nearly identical (Swenson 2011b).”
Flower colour and phylogeny along an altitudinal gradient in the Himalayas of Nepal (2014, methodology): “…sample occurred at the family level, and because deep phylogenetic relationships among angiosperms are now fairly robustly elucidated, we used the Soltis et al. (2011) family-level tree topology as a scaffold and grafted subfamilial topologies for taxa in our sample to this family tree (Appendix…”