DNA barcoding in land plants: evaluation of rbcL in a multigene tiered approach

By Steven G. Newmaster, A. Fazekas, Subramanyam Ragupathy. 2006

401 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/31da96077f52588c8918b5b874fa288b12eb3876

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Citations in the corpus

Choosing and Using a Plant DNA Barcode (2011, background): “[104], Kress and Erickson [7], Taberlet et al.”
Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama (2009, background): “As expected rbcLa demonstrated insufficient sequence variation to distinguish among closely related species (5, 23).”
DNA barcoding: a tool for improved taxon identification and detection of species diversity (2011, background): “However, in plants and fungi, the substitution rates of this gene are much slower (reviewed by Newmaster et al. 2006), and other sequence regions must be used.”
An update on chloroplast genomes (2008, background): “Newmaster et al. (2006) proposed a tiered approach in which a first tier region would provide resolution at a higher level (e.g.”
On the utility of DNA barcoding for species differentiation among brown macroalgae (Phaeophyceae) including a novel extraction protocol (2009, background): “Received 29 January 2008; accepted 3 October 2008. doi: 10.1111/j.1440-1835.2009.00530.x © 2009 Japanese Society of Phycology species identification (Newmaster et al. 2006).”
New universal matK primers for DNA barcoding angiosperms (2011, neutral): “: 86-10-6283- 6503; Fax: 86-10-6259-0843. posed (Chase et al., 2005; Kress et al., 2005; Newmaster et al., 2006; Yoo et al., 2006).”
Highly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding (2012, background): “Some regions of the chloroplast genome, for example, atpF-H, matK, psbK-I, rbcL, rpoB, rpoC1 and trnH-psbA have been relied upon heavily for development of candidate markers for plant DNA barcoding [8,9,10,11,12].”
Using DNA to assess errors in tropical tree identifications: How often are ecologists wrong and when does it matter? (2010, background): “First, most of the genetic markers commonly used for plants, including the ones used in this study, evolve much more slowly than the mitochondrial cytochrome oxidase I gene commonly used for barcoding animals (Kress et al. 2005, Newmaster et al. 2006).”
Plant DNA barcoding: from gene to genome (2015, background): “Despite extensive efforts to identify a universal plant barcode comparable to CO1 in animals, the task has proved difficult due to the lack of adequate variation within single loci (Kress et al., 2005; Newmaster et al., 2006; Chase et al., 2007; Kress & Erickson, 2007; Sass et al., 2007; Fazekas et ”
DNA Barcoding to Detect Chilli Adulteration in Traded Black Pepper Powder (2014, background): “Among the different barcoding loci psbA-trnH and rbcL are reported to have high amplification success with universal primers (Gregory et al., 2005; Kress et al., 2005; Newmaster et al., 2006).”
A Two-Locus Global DNA Barcode for Land Plants: The Coding rbcL Gene Complements the Non-Coding trnH-psbA Spacer Region (2007, background): “Similarly rbcL , which is a gene noted for its utility as a phylogenetic marker at the rank of family and genus, also demonstrated utility as a species-level identifier in the comparative data-mining tests [17].”
Evaluation of 10 plant barcodes in Bryophyta (Mosses) (2010, background): “Other suggested loci include rbcL (Newmaster et al., 2006), the chloroplast trnL intron (Taberlet et al., 2007), and three regions proposed by Ki-Joong Kim, atpF-atpH , matK, and psbK-psbI (Pennisi, 2007).”
An evaluation of rbcL, tufA, UPA, LSU and ITS as DNA barcode markers for the marine green macroalgae (2010, neutral): “Assessing green algal barcode markers 525 be used to achieve a balance of universality and species discrimination (see Newmaster et al., 2006; Hollingsworth et al., 2009a; Hollingsworth et al., 2009b).”
Use of ITS2 Region as the Universal DNA Barcode for Plants and Animals (2010, neutral): “Many loci have been proposed as plant barcodes, including ITS [22,23], rbcL [24,25], psbA-trnH [24,26,27], and matK [26–28].”