Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.)

By S. Temnykh, W. Park, N. Ayres, S. Cartinhour, N. Hauck, L. Lipovich, Yong-Gu Cho, T. Ishii, Susan McCouch. Theoretical and Applied Genetics, 2000

987 citations recorded by the source corpus.

Subfields: Genetics, Plant Science

View Paper: https://www.semanticscholar.org/paper/317e0149577693907af12d95c7a3da35b667ed91

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Citations in the corpus

QTL Analysis for Plant and Grain Characters of Sake-brewing Rice Using a Doubled Haploid Population (2002, methodology): “A framework map was first constructed according to the SSR marker order reported by Temnykh et al. (2000).”
Molecular fingerprinting of hybrids and assessment of genetic purity of hybrid seeds in rice using microsatellite markers (2004, methodology): “The sequence information for the primer pairs was obtained from the publications of Wu & Tanksley (1993), Chen et al. (1997) and Temnykh et al. (2000) and were synthesized from Life Technologies Inc., U.S.A. DNA amplification was carried out in a 10 µL reaction mixture containing 1 × PCR assay…”
SSR marker-based molecular characterization and genetic diversity analysis of aromatic landreces of rice (Oryza sativa L.) (2012, background): “genotypes (Temnykh et al., 2000).”
Mapping and Progress toward Map-Based Cloning of Brown Planthopper Biotype-4 Resistance Gene Introgressed from Oryza officinalis into Cultivated Rice, O. sativa (2002, methodology): “A DH population consisting of 96 individuals derived from The Modified Seed Box Screening Test (MSST) developed at an IR64 Azucena cross (Temnykh et al., 2000) and a recomIRRI (Heinrichs et al., 1985, p. 356) was used to screen parents binant inbred (RI) population consisting of 252 individuals and…”
Mapping QTLs for Sheath Blight Resistance in the Rice Line WSS2 (2004, background): “The marker sequence generally agreed with that of previous rice maps (Temnykh et al. 2000, Temnykh et al. 2001, McCouch et al. 2002).”
QTLs mapping of physiological traits related to salt tolerance in young rice seedlings (2009, methodology): “…techniques of molecular biology (Bassam et al. 1991, Saghi Maroof et al. 1994, Creste et al. 2001) and the mapping of rice genome (Chen et al. 1997, Temnykh et al. 2000, McCouch et al. 2002) allow plant scientists to locate the DNA determining the physiological trait that dictate salt tolerance in…”
Waxy gene haplotypes: Associations with apparent amylose content and the effect by the environment in an international rice germplasm collection (2008, methodology): “The CTn alleles of this microsatellite, subsequently renamed RM190 (Temnykh et al., 2000), in an historical collection of 89 non-glutinous USA rice cultivars explained 82.9% of the variation in AAC (Ayres et al., 1997).”
Diversity arrays: a solid state technology for sequence information independent genotyping. (2001, methodology): “In order to test whether the polymorphisms detected by our system behaved as Mendelian markers doubled haploid (DH) lines developed from the cross between IR64 and Azucena (12) were used for genetic mapping.”
Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.) (2003, background): “Similarly in rice, 60% of EST-derived microsatellite sequences were represented by the motifs CCG, ACG, AGG and ACC (Temnykh et al. 2000), while in maize CCG/GGC and AGG/CCT were most abundant (Chin 1996).”
Population structure and breeding patterns of 145 U.S. rice cultivars based on SSR marker analysis (2005, methodology): “(typically three markers per run along with ROX-labeled size These loci were not located in the regions identified by standard) and run on an ABI Prism 3700 DNA Analyzer Temnykh et al. (2000) as associated with low levels of according to manufacturer’s instructions (Applied Biosystems, diversity in ”
Locating QTLs controlling constitutive root traits in the rice population IAC 165 × Co39 (2003, background): “The decrease in polymorphism linked to this shift is no longer considered as a problem because of the availability of a huge number of highly polymorphic microsatellite markers in rice (Temnykh et al., 2000).”
Genic microsatellite markers in plants: features and applications. (2005, methodology): “For the identification of SSRs in publicly available EST and gene sequences, ‘regular expression matching’ or BLASTN tools were initially used in the FASTA or BLAST2 formatted sequences [9, 10 ].”
Evaluation of allelic diversity at chloroplast microsatellite loci among common wheat and its ancestral species (2001, background): “For plant species, microsatellite markers have been placed on the molecular framework maps mainly composed of RFLP markers in several crop species, including rice (Chen et al. 1997; Temnykh et al. 2000 ), maize (Senior et al. 1996), wheat (Roder et al. 1998), barley (Liu et al. 1996) and soybean (C”