MITOS: improved de novo metazoan mitochondrial genome annotation.

By Matthias Bernt, A. Donath, Frank Jühling, Fabian Externbrink, C. Florentz, Guido Fritzsch, J. Pütz, Martin Middendorf, Peter F. Stadler. Molecular Phylogenetics and Evolution, 2013

4,939 citations recorded by the source corpus.

Subfields: Genetics, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/29c29cd0607df0df3d5c5130e1ae29d4835678b5

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Citations in the corpus

tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes (2019, methodology): “…part of the high confidence set if they have a consistent isotype prediction (inferred from anticodon versus the highest scoring isotype-specific model) and they have an “expected” anticodon -- based on known decoding strategies of synonymous codons in eukaryotes, 15 anticodons are not used (63).”
Chloroplot: An Online Program for the Versatile Plotting of Organelle Genomes (2020, methodology): “…solely optimized for assembling (GetOrganelle: Jin et al., 2019; FastPlast: McKain and Wilson, 2017; MITObim: Hahn et al., 2013), annotating (Plann: Huang and Crong, 2015; MITOS: Bernt et al., 2013), and analyzing organelle genomes (Chlorobox: Tillich et al., 2017; CPGAVAS2: Shi et al., 2019).”
Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach (2013, methodology): “The MITOS web server (42) was used for automated annotation of the obtained mitochondrial genomes.”
Higher‐level phylogeny and evolutionary history of Pentatomomorpha (Hemiptera: Heteroptera) inferred from mitochondrial genome sequences (2019, methodology): “For each mitochondrial contig, annotation of tRNA genes was performed using MITOS webservers (Bernt et al., 2013) and trnacan-se (Lowe & Eddy, 1997).”
The Role of a Manager’s Intangible Capabilities in Resource Acquisition and Sustainable Competitive Performance (2019, background): “Financial skills and literacy endue managers with an ability to make a good strategic decision and timely interference to deal with an uncertain situation and with a sophisticated financial decision [69].”
How to sequence and annotate insect mitochondrial genomes for systematic and comparative genomics research (2014, background): “Software for implementing covariance modelling of rRNA secondary structures has recently been released (e.g. Infernal; Nawrocki et al., 2009, implemented in MITOS), which could potentially result in more consistent annotations of not just gene boundaries but also functional features such as individu”
OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes (2019, methodology): “These range from specialized applications such as MITOS (11), that were designed for a subset of organellar genomes and whose output requires little to no quality control or manual curation, to GeSeq, a flexible tool that allows the annotation of essentially any organellar genome (15).”