Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

By Daniel P. R. Herlemann, M. Labrenz, K. Jürgens, Stefan Bertilsson, Joanna J. Waniek, Anders F. Andersson. The ISME Journal, 2011

2,681 citations recorded by the source corpus.

Subfields: Ecology, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/297e66c475716902fa218b6ba36e7629660cb497

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Citations in the corpus

Life in the salinity gradient: Discovering mechanisms behind a new biodiversity pattern (2013, background): “Measured for the first time within the entire 2000 km long Baltic Sea salinity gradient (Herlemann et al., 2011), this remarkable molecular bacterial diversity accounts for a large variety of favorable environmental conditions for these microbes in the study area; their distribution trend line…”
Microbial richness and composition independently drive soil multifunctionality (2017, methodology): “We characterized bacterial diversity and composition in the soil surface (top 5 cm) along our observational gradient by using the Illumina Miseq profiling of ribosomal genes (Illumina Inc.) and the 341F/805R (Herlemann et al., 2011) primer set (see details in Appendix S1).”
Soil pH mediates the balance between stochastic and deterministic assembly of bacteria (2018, methodology): “The V3 and V4 region of the 16S rRNA gene was amplified using bacterial primers Bakt_341F and Bakt_805R [35].”
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies (2012, positive): “Primer pairs were: (i): S-D-Bact-0341b-S-17, 50-CCTACGGGNGGCWGCAG-30 (32), and S-D-Bact-0785-a-A-21, 50-GACTACHVGGGTATCTA ATCC-3 (32); and (ii): S-D-Bact-0008-a-S-16, 50-AGAG TTTGATCMTGGC-30 (33), and S-D-Bact-0907-a-A-20, 50-CCGTCAATTCMTTTGAGTTT-30 (34).”
Microbial Nitrogen Cycling in Estuaries: From Genes to Ecosystem Processes (2018, background): “…populations in different salinity regimes, similar both to benthic ammonia-oxidizing communities (see above) and the overall microbial community in estuary waters (e.g., Bouvier and del Giorgio 2002; Crump et al. 2004; Herlemann et al. 2011; Fortunato et al. 2012; Campbell and Kirchman 2013).”
Effects of plant community history, soil legacy and plant diversity on soil microbial communities (2020, background): “…amplify the internal transcribed spacer subregion 1 (ITS1, Toju et al. 2012) and the primer pair S-D-Bact-0341-b-S-17 (5’-CCTACGGGNGGCWGCAG) and S-D-Bact-0785-a-A-21 (5’-GACTACHVGGGTATCTAATCC) to amplify the variable regions V3 and V4 of the prokaryotic ribosomal RNA gene (Herlemann et al., 2011).”
Soil fungal abundance and plant functional traits drive fertile island formation in global drylands (2018, methodology): “2012) and the 341F/805R (bacteria) and FITS7/ITS4 (fungi) primer sets (Herlemann et al. 2011; Ihrmark et al. 2012) as described in Appendix A.”
Structure and function of the global ocean microbiome (2015, background): “suggested that temperature and light have stronger effects than nutrients or salinity (10, 43).”
Similar community assembly mechanisms underlie similar biogeography of rare and abundant bacteria in lakes on Yungui Plateau, China (2017, background): “Considering the importance of rare and abundant taxa, it is necessary to unveil their biogeographic patterns, which will provide more useful information for functional and ecological investigations (Herlemann et al. 2011; Hanson et al. 2012; Liu et al. 2015).”