Shi-Jie Chen

Molecular Biology · 2015–2023

A researcher in the Science corpus: 4 papers; trusts 9 researchers and is trusted by 0 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 85 citations into it
• Materials Chemistry — 28 citations into it
• Computational Biology & Bioinformatics — 22 citations into it

Whom Shi-Jie Chen trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. G. Sheldrick
2. Adam T. Zemla
3. Jessica S. Reuter
4. Marc-André Parisien
5. Ronny Lorenz
6. Elena Rivas

Papers from Shi-Jie Chen's perspective

Ordered by how strongly the researchers Shi-Jie Chen trusts endorse each paper. Same corpus, a different order for every researcher.

1. RNAstructure: software for RNA secondary structure prediction and analysis (BMC Bioinformatics)
2. Rfam: updates to the RNA families database (Nucleic Acids Res.)
3. Rfam: an RNA family database
4. Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families (Nucleic Acids Res.)
5. The Vienna RNA Websuite (Nucleic Acids Res.)
6. The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
7. LGA: a method for finding 3D similarities in protein structures
8. Protein data bank
9. A statistical test for conserved RNA structure shows lack of evidence for structure in lncRNAs (Nature Methods)
10. Direct-coupling analysis of residue coevolution captures native contacts across many protein families

Their papers

• RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures (2015) — 197 citations
• RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers (2020) — 141 citations
• RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme (2017) — 197 citations
• Advancing RNA 3D Structure Prediction: Exploring Hierarchical and Hybrid Approaches in CASP15 (2023) — 19 citations