PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization.

By Kenta Nakai, Paul Horton. 1999

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Citations in the corpus

ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST (2004, unknown): “Thepredictionaccuracyforeukaryoticproteinswas (9).”
Assessment of prediction accuracy of protein function from protein–protein interaction data (2001, methodology): “The prediction result of subcellular localization by PSORT (Nakai and Horton, 1999) is also shown.”
LocTree2 predicts localization for all domains of life (2012, methodology): “Our first hierarchal method, LocTree (Nair and Rost, 2005), used a concept initially introduced by the work on PSORT carried by Paul Horton and initiated by Kenta Nakai and Minoru Kanehisa (Horton et al., 2007; Nakai and Horton, 1999; Nakai and Kanehisa, 1991).”
Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. (2003, background): “…with genome-wide expression microarfind evidence by bioinformatic analysis (Claros, 1995; rays, it should be possible to more comprehensively Nakai and Horton, 1999) that these two proteins contain reconstruct pathways within the mitochondrion and to reasonable mitochondrial targeting…”
Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones (2004, unknown): “Subcellular localization targeting signals and transmembrane helices of 40,352 H-Inv proteins were predicted using the PSORT II (Nakai and Horton 1999), TargetP (Emanuelsson et al.”
Cell-PLoc 2.0: an improved package of web-servers for predicting subcellular localization of proteins in various organisms (2010, unknown): “, [4-59].”
The hormone resistin links obesity to diabetes (2001, background): “A notable feature of the deduced amino-acid sequence of resistin is a hydrophobic amino terminus that is predicted by the Prosor”
PSORT-B: improving protein subcellular localization prediction for Gram-negative bacteria (2003, methodology): “Since 1991, several automated subcellular localization predictors have been developed and made available online, including: PSORT (PSORT I) for prokaryotic organisms (3), PSORT II ( 4 ), iPSORT (5) and TargetP (6) for eukaryotic organisms, and NNPSL (7) and SubLoc (8) for both organism classes.”
Recent progress in protein subcellular location prediction. (2007, background): “During the past 15 years, a variety of predictors have been developed to deal with the challenge [7–39].”
Non-classical protein secretion in bacteria (2005, methodology): “PSORTb version 2 [49] classified correctly as 'extracellular' five of the proteins with known extracellular function, while the remaining were classified either as 'cytoplasmic' or 'unknown'.”