Principles of MicroRNATarget Recognition

By J. Brennecke, Alexander Stark, Robert B. Russell, Stephen M Cohen. 2005

295 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/237bbe147bf4b9d746faea0416cab9f222716e0e

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Citations in the corpus

Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs. (2007, background): “This trend extended to arbitrary subsets of the currently available species, including subsets that have been used for other prediction efforts in flies (Enright et al. 2003; Stark et al. 2003; Brennecke et al. 2005; Grun et al. 2005).”
Predicting effective microRNA target sites in mammalian mRNAs (2015, background): “DOI: 10.7554/eLife.05005 1 of 38 (position 2–8 match [Brennecke et al., 2005; Krek et al., 2005; Lewis et al., 2005]), and 7mer-A1 site (position 2–7 match with an A opposite position 1 [Lewis et al., 2005]).”
microPrimer: the biogenesis and function of microRNA (2005, background): “…a single target; and (4) lack of a strong secondary structure at the miRNA-binding site on the target (Enright et al., 2003; Lewis et al., 2003; Stark et al., 2003; Kiriakidou et al., 2004; Rajewsky and Socci, 2004; Brennecke et al., 2005; Krek et al., 2005; Lewis et al., 2005; Zhao et al., 2005).”
A guide through present computational approaches for the identification of mammalian microRNA targets (2006, background): “miRNA target sites can be classified into three categories: (i) 5′-dominant canonical, (ii) 5′-dominant seed only and (iii) 3′-compensator”
Most mammalian mRNAs are conserved targets of microRNAs. (2008, methodology): “2B; Brennecke et al. 2005; Grun et al. 2005; Krek et al. 2005; Lewis et al. 2005; Lall et al. 2006; Ruby et al. 2006, 2007; Gaidatzis et al. 2007).”
Common features of microRNA target prediction tools (2014, background): “The following types are the main types of seed matches (Lewis et al., 2003, 2005; Brennecke et al., 2005; Krek et al., 2005): 1.”
MicroRNA functions in animal development and human disease (2005, background): “…estimates range from one to hundreds of target genes for a given microRNA, based on target predictions using a variety of bioinformatics approaches (Brennecke et al., 2005; John et al., 2004; Kiriakidou et al., 2004; Lewis et al., 2005; Lewis et al., 2003; Rajewsky and Socci, 2004; Stark et al.,…”