Design and Application of Microsatellite Marker Panels for Semiautomated Genotyping of Rice ( Oryza sativa L.)

By J. Coburn, S. Temnykh, E. Paul, Susan McCouch. 2002

90 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/206f8b95494c9484cd54f9b1556bd8456a568b57

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In Plant Science

Citations in the corpus

Microsatellite diversity in tetraploid Gossypium germplasm: assembling a highly informative genotyping set of cotton SSRs (2006, methodology): “In rice (Coburn et al. 2002), soybean (Song et al. 1999) or sunflower (Tang et al. 2003), multiplex panels of microsatellites providing whole genome coverage have been designed to facilitate repetitive genotyping applications.”
Genetic analysis of basmati and non-basmati Pakistani rice (Oryza sativa L.) cultivars using microsatellite markers. (2010, methodology): “These markers have been utilized for many purposes including genome mapping, gene tagging, estimation of genetic diversity, varietal differentiation and purity testing (McCouch et al., 1997; Coburn et al., 2002; Nagaraju et al., 2002).”
Genetic Structure and Diversity in Oryza sativa L. (2005, background): “1997; Temnykh et al. 2000, 2001; Coburn et al. 2002).”
Population structure and breeding patterns of 145 U.S. rice cultivars based on SSR marker analysis (2005, background): “…with a62nd Ave., Johnston, IA 50131-1004, USA; J.R. Coburn and S.R. high throughput capillary based system (Rhodes et al.,McCouch, Dep. of Plant Breeding, Cornell Univ., Ithaca, NY 14853, USA; M.A. Redus and J.N. Rutger, USDA-ARS Dale Bumpers Na- 1998; Ponce et al., 1999; Coburn et al., 2002).”
Marker-assisted selection: an approach for precision plant breeding in the twenty-first century (2008, background): “Some of these genotyping platforms use fluorescently labelled primers that permit high levels of multiplexing (Coburn et al. 2002).”
Assessment of genetic diversity in Venezuelan rice cultivars using simple sequence repeats markers (2008, methodology): “Forty-eight SSR markers covering all the twelve chromosomes at about a 30 cM intervals were selected for the genetic diversity analysis based on the published rice SSR framework maps (Temnykh et al. 2000; Coburn et al. 2002).”
Suitability of mapped sequence tagged microsatellite site markers for establishing distinctness, uniformity and stability in aromatic rice (2004, methodology): “In rice, STMS markers have been utilized for many purposes including genome mapping, gene tagging, estimation of genetic diversity, varietal differentiation and purity testing (McCouch et al., 1997; Olufowote et al., 1997; Bligh et al., 1999; 2000; Coburn et al., 2002; Ni et al., 2002).”