Genetic Structure and Diversity in Oryza sativa L.

By Amanda J. Garris, T. Tai, J. Coburn, Stephen Kresovich, Susan McCouch. Genetics, 2005

1,128 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/8848a5d1641c930ef838d9a320c077bafc2aef7e

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Citations in the corpus

Improving Salinity Tolerance in Cereals (2013, background): “Comprehensive studies show that japonica emerged first, followed by indica (Garris et al., 2005).”
Through the genetic bottleneck: O. rufipogon as a source of trait-enhancing alleles for O. sativa (2007, methodology): “The basic number and identity of the sub-populations identified by Garris et al. (2005) using 169 SSRs were consistent with those detected by Glaszmann (1987) using only 15 isozyme markers.”
A QTL Cluster for Plant Architecture and Its Ecological Significance in Asian Wild Rice (2007, background): “The complex genetic structure was also observed within the cultivated forms, in which a number of varietal groups, including Japonica and Indica types, showed a significant genetic differentiation (Glaszmann 1987, Garris et al. 2005).”
Recent Updates on Salinity Stress in Rice: From Physiological to Molecular Responses (2011, background): “Oryza sativa accessions are known to be genetically organized into two major groups (indica and japonica) and four several minor groups (Garris et al., 2005; Glaszmann, 1987).”
Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes (2011, background): “'s five groups ( indica , aus , aromatic , temperate japonica and tropical japonica”
Genetic Mapping of Sheath Blight Resistance QTLs within Tropical Japonica Rice Cultivars (2009, methodology): “Independent genetic distance analyses of SSR loci (Garris et al., 2005; Lu et al., 2005) indicate that Pecos and its progenitors (Gulfrose, ‘Rexark Rogue’, and Tainan Iku 487; Bollich et 260 WWW.CROPS.ORG CROP SCIENCE, VOL. 49, JANUARY–FEBRUARY 2009 al., 1985) are grouped within japonica germplasm,…”
The Puzzle of Rice Domestication (2007, background): “Recent characterization of the genetic structure of cultivated rice further identified subdivisions within each subspecies, including aus and indica in traditionally defined indica and temperate japonica, tropical japonica, and aromatic in traditionally defined japonica (Garris et al. 2005).”
Genetic diversity analysis of rice cultivars (Oryza sativa L.) differing in salinity tolerance based on RAPD and SSR markers (2011, background): “…have been extensively used to identify genetic variation among rice species (Ren et al. 2003), analyze genetic structure within the cultivated rice (Garris et al. 2005), evaluate genetic diversity among strains of wild rice (Shishido et al. 2006) and among cultivars of cultivated rice (Yu et al.…”
Worldwide Genetic Diversity for Mineral Element Concentrations in Rice Grain (2015, neutral): “Among the five subgroup or ancestral lineages of rice (Garris et al., 2005; Zhao et al., 2011; Ren et al., 2013), this study included 578 accessions of the indica (IND) accessions, 412 temperate japonica (TEJ) accessions, 358 tropical japonicas (TRJ), 169 aus (AUS), 63 aromatic (ARO) accessions, and”
Development of an RFLP-based Rice Diversity Research Set of Germplasm (2005, methodology): “These two Indica groups seemed to correspond to the aus and indica groups classified using SSR markers (Garris et al. 2005).”
Archaeogenetic study of prehistoric rice remains from Thailand and India: evidence of early japonica in South and Southeast Asia (2016, background): “The genetic study by Garris et al. (2005) maintains distinct and separate domestication events for indica and japonica (temperate), with the divergence between the groups from the ancestral O. rufipogon estimated in 100,000 s of years ago (Ma and Bennetzen 2004; Tang et al. 2004; Tian et al.…”
A Rice Diversity Panel Evaluated for Genetic and Agro‐Morphological Diversity between Subpopulations and its Geographic Distribution (2011, background): “In recent years, using SSR and SNP markers, the existence of five major groups (subpopulations) has been resolved: indica, aus, tropical japonica, temperate japonica, and aromatic (Group V) (Garris et al., 2005; Caicedo et al., 2007; Zhao et al., 2010); these five subpopulation groups have also been”
Development of a Research Platform for Dissecting Phenotype–Genotype Associations in Rice (Oryza spp.) (2010, methodology): “Population structure in O. sativa O. sativa has a highly structured population, with six major subgroups identified using isozymes (Glaszmann 1987) and five subpopulations defined using SSRs (Garris et al. 2005) and/or SNPs (Caicedo et al. 2007; Zhao et al. 2010).”