Structure-Based Assembly of Protein Complexes in Yeast
By Patrick Aloy, B. Böttcher, Hugo Ceulemans, C. Leutwein, C. Mellwig, Susanne A. Fischer, A. Gavin, Peer Bork, G. Superti‐Furga, Luis Serrano and 1 more. Science, 2004
385 citations recorded by the source corpus.
Subfields: Molecular Biology
View Paper: https://www.semanticscholar.org/paper/1a9da644ca4e3cd6299908c31ee510b90a4ba0bb
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In Molecular Biology
- András Szilágyi
- Peer Bork
- Lars Juhl Jensen
- C. von Mering
- Yang Zhang
- Ranjit Prasad Bahadur
- Joël Janin
- Pinak Chakrabarti
Citations in the corpus
- Computational approaches for detecting protein complexes from protein interaction networks: a survey (2010, background): “[91] and (III) SGD database [92] based on Gene Ontology (GO) annotations.”
- Protein interaction networks from yeast to human. (2004, background): “Structure-based interaction prediction (including protein complex prediction and the prediction of crosstalk between complexes) has recently culminated in the delineation of the first network of modeled protein complexes in yeast [30 ].”
- Interactome3D: adding structural details to protein networks (2013, background): “We have previously shown that homologous pairs of inter-acting proteins (that is, interologues 15 ) tend to interact using the same binding interfaces 16 , which has opened the door for homology modeling of protein-protein interactions 17 .”
- Protein–protein interaction and quaternary structure (2008, methodology): “In other systems where an experimental structure of the components is lacking, docking may be performed on models generated in silico by homology or threading (Tovchigrechko et al. 2002 ; Aloy et al. 2004, 2005 ; Zhang & Skolnick, 2004).”
- Template-based structure modeling of protein-protein interactions (2013, methodology): “Template-based docking The third strategy is through structural alignment based recognition and superimposition, also referred to as template-based docking [19 ,20 ,22 ,23,30].”
- Global rigid body modeling of macromolecular complexes against small-angle scattering data. (2005, background): “Consequently, the focus of modern structural genomics is rapidly shifting toward the study of macromolecular complexes (2,3).”
- A core-attachment based method to detect protein complexes in PPI networks (2009, methodology): “This benchmark set consists of 428 protein complexes, from three sources: (I) MIPS [48], (II) Aloy et al. [49] and (III) SGD database [50] based on Gene Ontology (GO) annotations.”