Interactome3D: adding structural details to protein networks
By Roberto Mosca, Arnaud Céol, Patrick Aloy. Nature Methods, 2013
438 citations recorded by the source corpus.
Subfields: Computational Theory and Mathematics, Molecular Biology
View Paper: https://www.semanticscholar.org/paper/a5e436909389e242720b96262268ecdb12b3fb39
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In Computational Theory and Mathematics
- Yang Zhang
- Albert-László Barabási
- João P. G. L. M. Rodrigues
- Marinka Zitnik
- András Szilágyi
- Joseph Loscalzo
- Patrick Aloy
- Debora Marks
In Molecular Biology
- Yang Zhang
- Arne Elofsson
- Martin Weigt
- Debora Marks
- Christopher Sander
- David T. Jones
- Thomas A. Hopf
- András Szilágyi
Citations in the corpus
- Template-based structure modeling of protein-protein interactions (2013, methodology): “Due to the high speed of template identification and the fact that models can be constructed from sequences alone (in contrast to conventional rigid-body docking which starts from unbound monomer structures), TBM methods have achieved impressive success in genome-wide applications for constructing c”
- Towards a structurally resolved human protein interaction network (2021, background): “Computational approaches for predicting the structures of inter-acting protein pairs are primarily based on identifying structural similarity for pairs of proteins against experimentally determined protein complexes 4,6,13,14 .”
- Sequence co-evolution gives 3D contacts and structures of protein complexes (2014, background): “tion of protein complexes which has been significantly extended by homology-inferred 3D models (Mosca et al., 2012; Webb et al., 2014) (Hart et al.”
- Inter-residue, inter-protein and inter-family coevolution: bridging the scales (2017, background): “Molecular or structural biologists will request more detailed information about the links in such networks [2] to gain insight into the interaction mechanism: how do these proteins interact, what are the interfaces, what does the protein complex look like? Evolutionary biologists may ask if a PPI pr”
- Network medicine framework for identifying drug-repurposing opportunities for COVID-19 (2020, background): “(2) On April 15, 2020 (prediction date), we scanned clinicaltrials.”
- A reference map of the human binary protein interactome (2020, methodology): “5l, Supplementary Table 21).”