NPS@: network protein sequence analysis.

By Christophe Combet, Christophe Blanchet, Christophe Geourjon, Gilbert Deléage. TIBS -Trends in Biochemical Sciences. Regular ed, 2000

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ESPript/ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins (2003, methodology): “Connections to ESPript are now available from the protein domain database ProDom (14), the structure prediction server PredictProtein (15) and the server performing sequence analysis and similarities searches NPS@ (16).”
Geno3D: automatic comparative molecular modelling of protein (2002, positive): “In order to choose a molecular template, a special link is also provided towards the NPS@ analysis sequence–structure system (Combet et al., 2000).”
Characterization and Complete Genome Sequence of a Novel Coronavirus, Coronavirus HKU1, from Patients with Pneumonia (2005, methodology): “PHDhtm was also used when there was disagreement between the results obtained by using TMpred and TMHMM ( 3 ).”
Deciphering key features in protein structures with the new ENDscript server (2014, methodology): “To date, several biotool Web servers are inter-faced with ESPript: connections are available from T-Coffee (12), NPS@ (13), MultAlin (14) (each performing sequence analyses and similarity searches) and from the protein domain database ProDom (15).”
LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana (2008, methodology): “The PATTINPROT [128,129] tool was used to verify the stringency of the retrieved patterns by querying the UniProt [130,131] database.”