Defining the human deubiquitinating enzyme interaction landscape.

By M. Sowa, E. Bennett, Steven P. Gygi, J. Harper. Cell, 2009

1,568 citations recorded by the source corpus.

Subfields: Cell Biology, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/0a343e62cd54237bee1564df3528796c3ddde605

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Cell Biology

In Molecular Biology

Citations in the corpus

iProphet: Multi-level Integrative Analysis of Shotgun Proteomic Data Improves Peptide and Protein Identification Rates and Error Estimates* (2011, methodology): “MS-based reconstruction of protein interaction networks,(14–16) or the comprehensive characterization of proteomes of model organisms such as Drosophila (17), C. elegans (18), and S. cerevisiae (19) via extensive fractionation of the proteome sample and the mass spectro-metric measurement of each…”
Global landscape of cell envelope protein complexes in Escherichia coli (2017, background): “Cell wall Pili Extracellular (EC) space (15) b”
Meta- and Orthogonal Integration of Influenza “OMICs” Data Defines a Role for UBR4 in Virus Budding (2015, methodology): “APMS samples were scored using ComPASS and MiST (Jäger et al., 2012; Smoot et al., 2011; Sowa et al., 2009; Verschueren et al., 2015), as described in the Supplemental Experimental Procedures.”
Differential network biology (2012, methodology): “…protein interactions (Stelzl et al , 2005; Tarassov et al , 2008; Yu et al , 2008; Consortium, 2011) or protein complexes (Butland et al , 2005; Gavin et al , 2006; Krogan et al , 2006; Sowa et al , 2009) has been a widely used strategy for understanding the physical architecture of the cell.”
A Protein Complex Network of Drosophila melanogaster (2011, methodology): “This approach has been proven successful in the study of defined metazoan proteomic subspaces (Behrends et al., 2010; Bouwmeester et al., 2004; Ewing et al., 2007; Guerrero et al., 2008; Sowa et al., 2009), but there are no large-scale protein complex maps available for metazoans (reviewed in Gavin ”
Less label, more free: Approaches in label‐free quantitative mass spectrometry (2011, background): “Efforts to achieve a more detailed analysis of the human interactome have turned to localised studies, such as focusing on the kinase and phosphatase interactome [134] or deubiquinating enzyme interactions [135], and by investigating interactions quantitatively.”
The BioGRID interaction database: 2015 update (2014, methodology): “The systematic experimental identification and characterization of protein and genetic interaction networks in major model organism species and humans has continued to grow in pace and scale (21,23,29–35).”