Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF

By Haitao Li, S. Ilin, W. Wang, Elizabeth M Duncan, J. Wysocka, C. D. Allis, Dinshaw J. Patel. Nature, 2006

843 citations recorded by the source corpus.

Subfields: Molecular Biology

View Paper: https://www.semanticscholar.org/paper/004844537d28f6859c7e818c5ad9168ac848b6a2

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In Molecular Biology

1. S. Baylin
2. Peter A. Jones
3. A. Bird
4. Matthias Mann
5. C. D. Allis
6. T. Hunter
7. Brian D. Strahl
8. Yi Zhang

Citations in the corpus

• Histone acetyltransferase complexes: one size doesn't fit all (2007, background): “Most recently, the plant homeodomain, or PHD finger, which is present in a number of proteins in various HAT complexes, was shown biochemically and structurally to bind trimethylated H3K4 (Ref”
• CpG islands and the regulation of transcription. (2011, positive): “The H3K4me3 tail has been shown to interact with the NuRF chromatin remodeling complex (Li et al. 2006; Wysocka et al. 2006; Ruthenburg et al. 2007) as well as ING4-containing histone acetyltransferase complexes (Saksouk et al.”
• Understanding eukaryotic linear motifs and their role in cell signaling and regulation. (2008, background): “Figure 2 shows a peptide from the N-terminus of Histone H3, tri-methylated at lysine-4, in complex with the PHD finger of BPTF (28).”
• Histone Recognition and Large-Scale Structural Analysis of the Human Bromodomain Family (2012, background): “FALZ Fetal Alzheimer antigen BPTF, FAC1 Transcription factor N Q12830 (Li et al., 2006) GCN5L2 General control of amino acid synthesis 5-like 2 KAT2A, GCN5 Histone acetyl transferase N Q92830 (Yang et al.”
• Pioneer transcription factors: establishing competence for gene expression. (2011, background): “2010) apparently sensitive to specific histone codes (Turner 1993; Strahl and Allis 2000; Li et al. 2006).”
• The age of crosstalk: phosphorylation, ubiquitination, and beyond. (2007, background): “A recent structure of the BTPF PHD domain bound to an H3K4me3 peptide demonstrates how the adjacent bromodomain could in principle bind simultaneously to H3K4me3 and H4K16ac in the same nucleosome ( Li et al., 2006; Ruthenburg et al., 2007).”
• Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4. (2007, background): “Several papers described interactions between PHD fingers containing proteins (including BPTF) and methylated H3K4 or H3K36 peptides (Li et al., 2006; Pena et al., 2006; Shi et al., 2006; Wysocka et al., 2006).”
• A Unique pH-Dependent Recognition of Methylated Histone H3K4 by PPS and DIDO. (2017, background): “In the classic PHD finger proteins, such as BPTF and ING2, this residue could be a tyrosine or serine(Li et al., 2006; Peña et al., 2006), but it is a histidine (H919) in PPS.”