D. di Bernardo
Molecular Biology · 2003–2021
A researcher in the Science corpus: 9 papers; trusts 11 researchers and is trusted by 9 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 104 citations into it; #5,205 of 17,773 by trust here, #1,690 by citations
- Artificial Intelligence — 5 citations into it
Whom D. di Bernardo trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
Who trusts D. di Bernardo overall
- Peter Csermely
- Michael Hecker
- Mukesh Bansal
- Irene Cantone
- Nicolas Le Novère
- Daniel Marbach
- Diogo M. Camacho
- Vincenzo Belcastro
- Sandro Lambeck
- Tamás Korcsmáros
Papers from D. di Bernardo's perspective
Ordered by how strongly the researchers D. di Bernardo trusts endorse each paper. Same corpus, a different order for every researcher.
- Using Bayesian Networks to Analyze Expression Data (Annual International Conference on Research in Computational Molecular Biology)
- KEGG: Kyoto Encyclopedia of Genes and Genomes (Nucleic Acids Res.)
- Modeling and Simulation of Genetic Regulatory Systems: A Literature Review (J. Comput. Biol.)
- Osprey: a network visualization system (Genome Biology)
- Network component analysis: Reconstruction of regulatory signals in biological systems (Proceedings of the National Academy of Sciences of the United States of America)
- The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo (Genome Biology)
- Cytoscape: a software environment for integrated models of biomolecular interaction networks.
- A Practical Guide to Splines
- Reverse engineering gene networks: Integrating genetic perturbations with dynamical modeling (Proceedings of the National Academy of Sciences of the United States of America)
- Construction of a genetic toggle switch in Escherichia coli (Nature)
Their papers
- The Transcriptional Landscape of the Mammalian Genome (2005) — 3,572 citations
- Inferring Genetic Networks and Identifying Compound Mode of Action via Expression Profiling (2003) — 1,207 citations
- Discovery of drug mode of action and drug repositioning from transcriptional responses (2010) — 755 citations
- How to infer gene networks from expression profiles (2007) — 907 citations
- Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks (2005) — 391 citations
- Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1 (2021) — 3,841 citations
- A yeast synthetic network for in vivo assessment of reverse-engineering and modeling approaches. (2009) — 413 citations
- Inference of gene regulatory networks and compound mode of action from time course gene expression profiles (2006) — 418 citations
- TFEB controls cellular lipid metabolism through a starvation-induced autoregulatory loop (2013) — 954 citations