Muhammad Saad Shamim
Molecular Biology · 2016–2018
A researcher in the Science corpus: 5 papers; trusts 3 researchers and is trusted by 2 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 63 citations into it; #14,332 of 17,773 by trust here, #6,475 by citations
Whom Muhammad Saad Shamim trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
Who trusts Muhammad Saad Shamim overall
Papers from Muhammad Saad Shamim's perspective
Ordered by how strongly the researchers Muhammad Saad Shamim trusts endorse each paper. Same corpus, a different order for every researcher.
- Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom (Cell Systems)
- A three-dimensional map of the human genome at kilobase resolution reveals principles of chromatin looping (Cell)
- Fast and accurate long-read alignment with Burrows–Wheeler transform (Bioinform.)
- CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus. (Genes & Development)
- Local regulation of gene expression by lncRNA promoters, transcription, and splicing (Nature)
- Finishing the euchromatic sequence of the human genome (Nature)
- High-quality draft assemblies of mammalian genomes from massively parallel sequence data (Proceedings of the National Academy of Sciences of the United States of America)
- Phased Diploid Genome Assembly with Single Molecule Real-Time Sequencing (Nature Methods)
- Integrative Genomics Viewer (Nature Biotechnology)
- Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species (GigaScience)
Their papers
- Juicer provides a one-click system for analyzing loop-resolution Hi-C experiments (2016) — 3,341 citations
- Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom (2016) — 2,078 citations
- Cohesin loss eliminates all loop domains (2017) — 1,648 citations
- De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds (2016) — 2,407 citations
- The Juicebox Assembly Tools module facilitates de novo assembly of mammalian genomes with chromosome-length scaffolds for under $1000 (2018) — 332 citations