Thomas D. Otto
Molecular Biology · 2011–2020
A researcher in the Science corpus: 6 papers; trusts 5 researchers and is trusted by 0 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 62 citations into it
Whom Thomas D. Otto trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Stefan Kurtz
- Heng Li
- Genome analysis
- Nicholas J. Loman
- Adam M. Phillippy
- Arthur L. Delcher
- Steven L. Salzberg
Papers from Thomas D. Otto's perspective
Ordered by how strongly the researchers Thomas D. Otto trusts endorse each paper. Same corpus, a different order for every researcher.
- Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
- Basic local alignment search tool.
- Assembling large genomes with single-molecule sequencing and locality-sensitive hashing (Nature Biotechnology)
- The Sequence Alignment/Map format and SAMtools (Bioinform.)
- Accurate Whole Human Genome Sequencing using Reversible Terminator Chemistry (Nature)
- Theoretical and practical advances in genome halving
- Substantial biases in ultra-short read data sets from high-throughput DNA sequencing (Nucleic Acids Research)
- Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM
- QUAST: quality assessment tool for genome assemblies (Bioinform.)
- Artemis: sequence visualization and annotation (Bioinform.)
Their papers
- A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers (2012) — 2,057 citations
- Circlator: automated circularization of genome assemblies using long sequencing reads (2015) — 1,076 citations
- RATT: Rapid Annotation Transfer Tool (2011) — 320 citations
- Distinct synovial tissue macrophage subsets regulate inflammation and remission in rheumatoid arthritis (2020) — 595 citations
- Uncovering the essential genome of the human malaria parasite Plasmodium falciparum by saturation mutagenesis (2018) — 821 citations
- Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes (2012) — 481 citations