Wim F. Vranken
Molecular Biology · 2005–2021
A researcher in the Science corpus: 8 papers; trusts 15 researchers and is trusted by 5 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 141 citations into it; #6,068 of 17,773 by trust here, #4,989 by citations
- Materials Chemistry — 59 citations into it
- Computational Biology & Bioinformatics — 32 citations into it
- Spectroscopy — 26 citations into it; #491 of 1,674 by trust here, #1,078 by citations
- Atomic and Molecular Physics, and Optics — 10 citations into it
- Computational Theory and Mathematics — 10 citations into it; #5,582 of 12,182 by trust here, #7,851 by citations
- Computational Chemistry & Drug Discovery — 7 citations into it
- Physical and Theoretical Chemistry — 5 citations into it
Whom Wim F. Vranken trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- A. Brunger
- Junmei Wang
- Richard A. Engh
- W. L. Jorgensen
- Chris Oostenbrink
- Berk Hess
- Viktor Hornak
- Rajarshi Guha
- Alpeshkumar K. Malde
- R. Huber
Who trusts Wim F. Vranken overall
- David L. Mobley
- Jonathan J. Helmus
- João P. G. L. M. Rodrigues
- Sjoerd Jacob de Vries
- Woonghee Lee
- S. P. Skinner
- Alexandre M. J. J. Bonvin
- Kai J. Kohlhoff
- Michael R. Shirts
- C. Jaroniec
Papers from Wim F. Vranken's perspective
Ordered by how strongly the researchers Wim F. Vranken trusts endorse each paper. Same corpus, a different order for every researcher.
- Accurate Bond and Angle Parameters for X-ray Protein Structure Refinement
- CHARMM: The biomolecular simulation program
- Automatic atom type and bond type perception in molecular mechanical calculations. (Journal of Molecular Graphics and Modelling)
- Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids
- Scalable molecular dynamics with NAMD
- The Uppsala Electron-Density Server.
- Exploring the helix-coil transition via all-atom equilibrium ensemble simulations. (Biophysical Journal)
- Development and testing of a general amber force field
- CHARMM General Force Field (CGenFF): A force field for drug-like molecules compatible with the CHARMM all-atom additive biological force fields
- A biomolecular force field based on the free enthalpy of hydration and solvation: The GROMOS force‐field parameter sets 53A5 and 53A6 (Journal of Computational Chemistry)
Their papers
- PDBe: Protein Data Bank in Europe (2010) — 289 citations
- MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins (2017) — 194 citations
- DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins (2017) — 176 citations
- DisProt 7.0: a major update of the database of disordered proteins (2016) — 138 citations
- ACPYPE - AnteChamber PYthon Parser interfacE (2012) — 2,867 citations
- DisProt 7.0: a major update of the database of disordered proteins (2016) — 203 citations
- The CCPN data model for NMR spectroscopy: Development of a software pipeline (2005) — 3,290 citations
- PDBe-KB: collaboratively defining the biological context of structural data (2021) — 68 citations